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(-) Description

Title :  CRYSTAL STRUCTURE OF PC4 W89Y MUTANT COMPLEX WITH DNA
 
Authors :  Y. Zhao, J. Liu
Date :  08 Jul 14  (Deposition) - 18 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Huang, Y. Zhao, H. Liu, D. Huang, X. Cheng, W. Zhao, I. A. Taylor, J. Liu, Y. L. Peng
Substitution Of Tryptophan 89 With Tyrosine Switches The Dna Binding Mode Of Pc4.
Sci. Rep. V. 5 8789 2015
PubMed-ID: 25739870  |  Reference-DOI: 10.1038/SREP08789

(-) Compounds

Molecule 1 - ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR P15
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 63-217
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POSITIVE COFACTOR 4, PC4, SUB1 HOMOLOG, P14
 
Molecule 2 - 5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP *TP*TP*TP*TP*TP*G)-3'
    Chains: C
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DT19G1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4USG)

(-) Sites  (0, 0)

(no "Site" information available for 4USG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4USG)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4USG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4USG)

(-) Exons   (0, 0)

(no "Exon" information available for 4USG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4usg A  62 AMFQIGKMRYVSVRDFKGKVLIDIREYYMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain B from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4usg B  62 AMFQIGKMRYVSVRDFKGKVLIDIREYYMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
                                    71        81        91       101       111       121      


Chain C from PDB  Type:DNA  Length:14
                                              
                 4usg C   5 TTTTTTTTTTTTTT  22
                                 || 18    
                                10|       
                                 15
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4USG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4USG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4USG)

(-) Gene Ontology  (15, 15)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TCP4_HUMAN | P53999: 1pcf 2c62 2phe

(-) Related Entries Specified in the PDB File

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