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(-) Description

Title :  STRUCTURAL BASIS FOR TARGETING AND ELONGATION ARREST OF BACILLUS SIGNAL RECOGNITION PARTICLE
 
Authors :  B. Beckert, A. Kedrov, D. Sohmen, G. Kempf, K. Wild, I. Sinning, H. Stahl D. N. Wilson, R. Beckmann
Date :  15 Dec 14  (Deposition) - 09 Sep 15  (Release) - 21 Oct 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  7.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Signal Recognition Particle (Srp), Stalled-Ribosome, Translation, Translocation, Mifm Stalling (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Beckert, A. Kedrov, D. Sohmen, G. Kempf, K. Wild, I. Sinning, H. Stahlberg, D. N. Wilson, R. Beckmann
Translational Arrest By A Prokaryotic Signal Recognition Particle Is Mediated By Rna Interactions.
Nat. Struct. Mol. Biol. V. 22 767 2015
PubMed-ID: 26344568  |  Reference-DOI: 10.1038/NSMB.3086

(-) Compounds

Molecule 1 - 6S RNA
    ChainsA
    Organism ScientificBACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid224308
 
Molecule 2 - FTSQ SIGNAL SEQUENCE
    ChainsB
    Organism ScientificBACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid224308
 
Molecule 3 - SIGNAL RECOGNITION PARTICLE PROTEIN
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPETRSF
    Expression System Vector TypePLASMID
    FragmentM DOMAIN
    Organism ScientificBACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid224308
    SynonymFIFTY-FOUR HOMOLOG, FFH

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UE4)

(-) Sites  (0, 0)

(no "Site" information available for 4UE4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UE4)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Glu C:349 -Leu C:350
2Gly C:358 -Lys C:359
3Leu C:363 -Lys C:364
4Lys C:364 -Asn C:365
5Asn C:365 -Ile C:366
6Gln C:367 -Val C:368
7Asp C:369 -Glu C:370

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UE4)

(-) Exons   (0, 0)

(no "Exon" information available for 4UE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:266
                                                                                                                                                                                                                                                                                                          
                 4ue4 A   4 GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGUUUACUUUAAGGCCUGCCUUAAGUAAGUGGUGUUGACGUUUGGGUCCUGCGCAAUGGGAAUUCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGAAACCUCUCAUGUGCCGCAGGGUUGCCUGGGCCGAGCUAACUGCUUAAGUAACGCUAGGGUAGCGAAUCGACAGAAGGUGCACGGU 269
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263      

Chain B from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4ue4 B  10 LFLLTVCTTVLVSGWVVLGWME  31
                                    19        29  

Chain C from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4ue4 C 330 TLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINASRRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMT 431
                                   339       349       359       369       379       389       399       409       419       429  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UE4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UE4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UE4)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn C:365 - Ile C:366   [ RasMol ]  
    Asp C:369 - Glu C:370   [ RasMol ]  
    Gln C:367 - Val C:368   [ RasMol ]  
    Glu C:349 - Leu C:350   [ RasMol ]  
    Gly C:358 - Lys C:359   [ RasMol ]  
    Leu C:363 - Lys C:364   [ RasMol ]  
    Lys C:364 - Asn C:365   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSQ_ECOLI | P061362vh1 4v6m

(-) Related Entries Specified in the PDB File

4ue5 STRUCTURAL BASIS FOR TARGETING AND ELONGATION ARREST OF BACILLUS SIGNAL RECOGNITION PARTICLE RELATED ID: EMD-2843 RELATED DB: EMDB