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(-) Description

Title :  HSMETAP (F220M) IN COMPLEX WITH 1-AMINO-2-PROPYLPENTYL]PHOSPHONIC ACID
 
Authors :  T. Arya, A. Addlagatta
Date :  30 Jul 14  (Deposition) - 25 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Arya, R. Reddi, C. Kishor, R. J. Ganji, S. Bhukya, R. Gumpena, S. Mcgowan, M. Drag, A. Addlagatta
Identification Of The Molecular Basis Of Inhibitor Selectivity Between The Human And Streptococcal Type I Methionine Aminopeptidases
J. Med. Chem. V. 58 2350 2015
PubMed-ID: 25699713  |  Reference-DOI: 10.1021/JM501790E

(-) Compounds

Molecule 1 - METHIONINE AMINOPEPTIDASE 1
    ChainsA
    EC Number3.4.11.18
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneMETAP1, KIAA0094
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMETAP 1,PEPTIDASE M 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CO2Ligand/IonCOBALT (II) ION
2GOL1Ligand/IonGLYCEROL
3K1Ligand/IonPOTASSIUM ION
4Q081Ligand/Ion[(1R)-1-AMINO-2-PROPYLPENTYL]PHOSPHONIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:240 , HIS A:303 , GLU A:336 , GLU A:367 , CO A:401 , Q08 A:404binding site for residue CO A 400
2AC2SOFTWAREASP A:229 , ASP A:240 , GLU A:367 , CO A:400 , Q08 A:404binding site for residue CO A 401
3AC3SOFTWARESER A:205 , ASN A:207 , VAL A:209 , SER A:363 , HOH A:685binding site for residue K A 402
4AC4SOFTWARETHR A:172 , THR A:204 , SER A:205 , VAL A:206 , VAL A:209 , ILE A:214 , ASP A:216 , ARG A:218 , HOH A:557binding site for residue GOL A 403
5AC5SOFTWARESER A:191 , HIS A:212 , ASP A:229 , THR A:231 , ASP A:240 , HIS A:303 , MET A:309 , HIS A:310 , GLU A:336 , TRP A:353 , GLU A:367 , CO A:400 , CO A:401 , HOH A:687 , HOH A:688binding site for residue Q08 A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U6W)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:100 -Pro A:101
2Ala A:312 -Pro A:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U6W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U6W)

(-) Exons   (0, 0)

(no "Exon" information available for 4U6W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhh....hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..ee...hhhhh....eeee..eee.............eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..ee.....eee......eeeee................eeee..eee.....eee......eee.....eee..eeeee....eee.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u6w A  90 YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLMHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS 393
                                    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U6W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U6W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U6W)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:312 - Pro A:313   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAP11_HUMAN | P535822b3h 2b3k 2b3l 2g6p 2gz5 2nq6 2nq7 4fli 4flj 4flk 4fll 4hxx 4ikr 4iks 4ikt 4iku 4iu6 4u1b 4u69 4u6c 4u6e 4u6j 4u6z 4u70 4u71 4u73 4u75 4u76

(-) Related Entries Specified in the PDB File

4u1b 4u69 4u6c 4u6e 4u6j 4u6z 4u70 4u71 4u73 4u75 4u76