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(-) Description

Title :  APO MAP4K4 T181E PHOSPHOMIMETIC MUTANT
 
Authors :  S. F. Harris, P. Wu, M. Coons
Date :  23 Jul 14  (Deposition) - 06 Jan 16  (Release) - 06 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A  (1x)
Keywords :  Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Wu, H. Chen, M. Coons, T. D. Crawford, D. S. Kirkpatrick, L. Murray, C. O. Ndubaku, J. Nonomiya, V. Pham, S. Schmidt, T. Smysczek, P. Vitorino, W. Ye, S. F. Harris
Structural Plasticity And Kinase Activation In A Cohort Of Map4K4 Structures
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 4
    ChainsB, A
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System StrainSF9
    Expression System Taxid7108
    FragmentKINASE DOMAIN (UNP RESIDUES 2-328)
    GeneMAP4K4, HGK, KIAA0687, NIK
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHPK/GCK-LIKE KINASE HGK,MAPK/ERK KINASE KINASE KINASE 4, MEKKK 4,NCK-INTERACTING KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (1x) B
Biological Unit 3 (1x)A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA-1Ligand/IonSODIUM ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2NA-1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:275 , GLN A:276 , PRO A:278 , GLN A:282 , ASP A:307 , ARG A:308 , HOH A:519 , HOH A:537 , HOH A:538 , MET B:275 , GLN B:276 , HOH B:430binding site for residue MES A 401
2AC2SOFTWAREHIS A:145 , ILE A:146 , TYR A:212 , SER A:279 , THR A:280 , GLU A:281 , HOH A:520binding site for residue MES A 402
3AC3SOFTWARESER A:77 , HIS A:78 , HIS A:79 , ILE A:82 , THR A:84 , GLU A:106 , HOH A:701binding site for residue NA A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U3Z)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:92 -Ser A:93
2Pro A:94 -Pro A:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U3Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U3Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4U3Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eee.....eeeee.....eeeeeeee....hhhhhhhhhhhhhhh.....eeeeee......eeeeeee....eehhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhhh................hhhhh...........hhhhhhhhhhhhhhhhhh.......hhhhhhhhh.............hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u3z A  17 SLRDPAGIFELVEVVVYKGRHVKTGQLAAIKVMDVTEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDREVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRK 311
                                    26    ||  43        53      ||66        76        86        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309  
                                         31|                   60|                             95|                                                                                                                                                                                                                    
                                          39                    64                              99                                                                                                                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eee......eeeeeee.....eeeeeeeeehhhhhhhhhhhhhh............eeeeeee.......eeeeeeee.....hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee..........................hhhhh..........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u3z B  14 DLSSLRDPAGIFELVEVTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDREVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRK 311
                                    23      ||37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307    
                                           30|                                                                                                                                                                                                                                                                                    
                                            35                                                                                                                                                                                                                                                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U3Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U3Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U3Z)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M4K4_HUMAN | O958194obo 4obp 4obq 4rvt 4u3y 4u40 4u41 4u42 4u43 4u44 4u45 4zk5 4zp5 5di1 5j95

(-) Related Entries Specified in the PDB File

4u3y 4u40 4u41 4u42 4u43 4u44 4u45