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(-) Description

Title :  PLASMODIUM FALCIPARUM RETICULOCYTE-BINDING PROTEIN HOMOLOGUE 5 (PFRH5) BOUND TO BASIGIN
 
Authors :  K. E. Wright, K. A. Hjerrild, J. Bartlett, A. D. Douglas, J. Jin, R. E. Bro R. Ashfield, S. B. Clemmensen, W. A. De Jongh, S. J. Draper, M. K. Higgi
Date :  14 Jul 14  (Deposition) - 13 Aug 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Malaria Erythrocyte Invasion, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. E. Wright, K. A. Hjerrild, J. Bartlett, A. D. Douglas, J. Jin, R. E. Brown, J. J. Illingworth, R. Ashfield, S. B. Clemmensen, W. A. De Jongh, S. J. Draper, M. K. Higgins
Structure Of Malaria Invasion Protein Rh5 With Erythrocyte Basigin And Blocking Antibodies.
Nature V. 515 427 2014
PubMed-ID: 25132548  |  Reference-DOI: 10.1038/NATURE13715

(-) Compounds

Molecule 1 - RETICULOCYTE BINDING PROTEIN 5
    ChainsA, C
    EngineeredYES
    Expression SystemDROSOPHILA MELANOGASTER
    Expression System CommonFRUIT FLY
    Expression System Taxid7227
    Organism ScientificPLASMODIUM FALCIPARUM
    Organism Taxid5833
    SynonymRETICULOCYTE-BINDING PROTEIN HOMOLOGUE 5, RH5
 
Molecule 2 - BASIGIN
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneBSG, UNQ6505/PRO21383
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym5F7,COLLAGENASE STIMULATORY FACTOR,EXTRACELLULAR MATRIX METALLOPROTEINASE INDUCER,EMMPRIN,LEUKOCYTE ACTIVATION ANTIGEN M6,OK BLOOD GROUP ANTIGEN,TUMOR CELL-DERIVED COLLAGENASE STIMULATORY FACTOR,TCSF

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U0Q)

(-) Sites  (0, 0)

(no "Site" information available for 4U0Q)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:224 -A:317
2A:345 -A:351
3B:41 -B:87
4B:126 -B:185
5C:224 -C:317
6C:345 -C:351
7D:41 -D:87
8D:126 -D:185

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu B:90 -Pro B:91
2Glu B:92 -Pro B:93
3Val B:131 -Pro B:132
4Leu D:90 -Pro D:91
5Glu D:92 -Pro D:93
6Val D:131 -Pro D:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U0Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U0Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4U0Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0q A 160 SIDILQEKEGHLDFVIIPHYTFLDYYKHLSYNSIYHKSSTYGKYIAVDAFIKKINEAYDKVKSKCNDIKNDLIATIKKLEHPYKMMDEYNTKKKKLIKCIKNHENDFNKICMDMKNYGTNLFEQLSCYNNNFCNTNGIRYHYDEYIHKLILSVKSKNLNKDLSDMTNILQQSELLLTNLNKKMGSYIYIDTIKFIHKEMKHIFNRIEYHTKIINDKTKIIQDKIKLNIWRTFQKDELLKRILDMSNEYSLFITSDHLRQMLYNTFYSKEKHLNNIFHHLIYVLQMK 504
                                   169       179       189       199       209       219       229       239  ||   308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498      
                                                                                                            242|                                                                                                                                                                                                          
                                                                                                             302                                                                                                                                                                                                          

Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeeeee........eeee...eeee.......eeeeeehhhhh.eeeeeee.....eeeeeee......ee...eeee.....eeeeee........eeeeee......eee..hhhh.eeeeee..eeeeee.........eeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0q B  23 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 203
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202 

Chain C from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0q C 160 SIDILQEKEGHLDFVIIPHYTFLDYYKHLSYNSIYHKSSTYGKYIAVDAFIKKINEAYDKVKSKCNDIKNDLIATIKKLEHPYKMMDEYNTKKKKLIKCIKNHENDFNKICMDMKNYGTNLFEQLSCYNNNFCNTNGIRYHYDEYIHKLILSVKSKNLNKDLSDMTNILQQSELLLTNLNKKMGSYIYIDTIKFIHKEMKHIFNRIEYHTKIINDKTKIIQDKIKLNIWRTFQKDELLKRILDMSNEYSLFITSDHLRQMLYNTFYSKEKHLNNIFHHLIYVLQM 503
                                   169       179       189       199       209       219       229       239  ||   308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498     
                                                                                                            242|                                                                                                                                                                                                         
                                                                                                             302                                                                                                                                                                                                         

Chain D from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeeeee........eeee...eeeee......eeeeeehhhhh.eeeeeee.....eeeeeee......ee...eeee.....eeeeee........eeeeee......eee..hhhh.eeeeee..eeeeee.........eeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u0q D  23 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 203
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U0Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U0Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U0Q)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu B:92 - Pro B:93   [ RasMol ]  
    Glu D:92 - Pro D:93   [ RasMol ]  
    Leu B:90 - Pro B:91   [ RasMol ]  
    Leu D:90 - Pro D:91   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B2L3N7_PLAFA | B2L3N75mi0
        BASI_HUMAN | P356133b5h 3i84 3i85 3qqn 3qr2
UniProtKB/TrEMBL
        B2L3N7_PLAFA | B2L3N74u0r 4u1g

(-) Related Entries Specified in the PDB File

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