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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ALK WITH A COVALENT MODIFICATION
 
Authors :  J. Badger, V. Sridhar, B. Chie-Leon, V. L. Nienaber, F. H. Hausheer
Date :  19 Jun 14  (Deposition) - 11 Feb 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Atp-Binding, Receptor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. R. Parker, P. N. Petluru, V. L. Nienaber, M. Zhao, P. Y. Ayala, J. Badger, B. Chie-Leon, V. Sridhar, C. Logan, H. Kochat, F. H. Haushee
Novel Covalent Modification Of Human Anaplastic Lymphoma Kinase (Alk) And Potentiation Of Crizotinib-Mediated Inhibition Of Alk Activity By Bnp7787.
Onco Targets Ther V. 8 375 2015
PubMed-ID: 25678804  |  Reference-DOI: 10.2147/OTT.S73690

(-) Compounds

Molecule 1 - ALK TYROSINE KINASE RECEPTOR
    ChainsA
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSP9
    Expression System Taxid7108
    FragmentUNP RESIDUES 1095-1410
    GeneALK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymANAPLASTIC LYMPHOMA KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1COM2Ligand/Ion1-THIOETHANESULFONIC ACID
2EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:1231 , CYS A:1235 , GLN A:1238binding site for residue COM A 1501
2AC2SOFTWAREARG A:1120 , CYS A:1156 , ASP A:1160 , HOH A:1722binding site for residue COM A 1502
3AC3SOFTWAREPHE A:1245 , ILE A:1246 , ARG A:1248 , TYR A:1278binding site for residue EDO A 1503
4AC4SOFTWAREPRO A:1331 , MET A:1348 , ASP A:1349binding site for residue EDO A 1504
5AC5SOFTWAREILE A:1171 , SER A:1172 , PHE A:1174 , ARG A:1181 , CYS A:1182 , LEU A:1224 , HOH A:1672binding site for residue EDO A 1505

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:1156 -A:1502
2A:1235 -A:1501

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:1190 -Pro A:1191

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TT7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TT7)

(-) Exons   (0, 0)

(no "Exon" information available for 4TT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.hhh...hhh.eeeeeeee..eeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee......eeeee....eehhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee........eee..hhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4tt7 A 1094 MNYCFAGKTSSISDLKEVPRKNITLIRGLGGEVYEGQVSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIE 1400
                                  1103      1113      1123|     1144      1154      1164      1174      1184      1194      1204      1214|     1227      1237      1247      1257      1267      1277   || 1289      1299      1309      1319      1329      1339      1349      1359      1369      1379      1389      1399 
                                                      1123|    1136|                                                                  1214|                                                           1281|                                                                                                                    
                                                       1128     1144                                                                   1218                                                            1284                                                                                                                    

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TT7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TT7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TT7)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:1190 - Pro A:1191   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALK_HUMAN | Q9UM732kup 2kuq 2xb7 2xba 2xp2 2yfx 2yhv 2yjr 2yjs 2ys5 2yt2 3aox 3l9p 3lcs 3lct 4anl 4anq 4ans 4ccb 4ccu 4cd0 4cli 4clj 4cmo 4cmt 4cmu 4cnh 4ctb 4ctc 4dce 4fnw 4fnx 4fny 4fnz 4fob 4foc 4fod 4joa 4mkc 4z55 5a9u 5aa8 5aa9 5aaa 5aab 5aac 5fto 5ftq 5imx 5iug 5iuh 5iui 5j7h 5kz0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TT7)