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(-) Description

Title :  MAP4K4 IN COMPLEX WITH A PYRIDIN-2(1H)-ONE DERIVATIVE
 
Authors :  A. Richters, C. Becker, S. Kleine, D. Rauh
Date :  27 Nov 14  (Deposition) - 27 May 15  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pyridin-2(1H)-One Ligand, Type I, Dfg-In, Serine/Threonine Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Schroder, T. Forster, S. Kleine, C. Becker, A. Richters, S. Ziegler D. Rauh, K. Kumar, H. Waldmann
Neuritogenic Militarinone-Inspired 4-Hydroxypyridones Targe The Stress Pathway Kinase Map4K4.
Angew. Chem. Int. Ed. Engl. V. 54 12398 2015
PubMed-ID: 25908259  |  Reference-DOI: 10.1002/ANIE.201501515

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE KINASE 4
    ChainsA, B
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System PlasmidPIEX/BAC3
    Expression System Taxid7108
    Expression System Vector TypePLASMA
    FragmentKINASE DOMAIN (UNP RESIDUES 1-325)
    GeneHGK, KIAA0687, MAP4K4, NIK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHPK/GCK-LIKE KINASE HGK, MAPK/ERK KINASE KINASE KINASE 4, MEK KINASE KINASE 4, MEKKK 4, NCK-INTERACTING KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
13XM1Ligand/Ion3-HEXANOYL-4-HYDROXY-5-(4-HYDROXYPHENYL)PYRIDIN-2(1H)-ONE
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:36 , VAL A:39 , ALA A:52 , GLU A:106 , PHE A:107 , CYS A:108 , GLY A:109 , LEU A:160BINDING SITE FOR RESIDUE 3XM A 401
2AC2SOFTWAREMET A:275 , GLN A:276 , GLN A:282 , MET B:275 , GLN B:276BINDING SITE FOR RESIDUE MES A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RVT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:66 -Lys A:67
2Pro A:95 -Gly A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RVT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RVT)

(-) Exons   (0, 0)

(no "Exon" information available for 4RVT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh......eeeeee.hhhh...eeeeee.....eeeeeeee......hhhhhhhhhh.......eeeeeee........eeeeee.....eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...........eee.....eee...............hhhhh............hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rvt A  14 DLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRT 309
                                    23        33        43        53      ||67        77        87        97       107       117       127       137       147       157       167      |188       198       208       218       228       238       248       258       268       278       288       298       308 
                                                                         60|                                                                                                          174|                                                                                                                           
                                                                          65                                                                                                           186                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.....eee........eeeeeeeee.....eeeeeeeeehhhhhhhhhhhhhhh...........eeeeeee.....eeeeeeee.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.......hhhhhh.............hhhhh..........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.............hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rvt B  13 IDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRK 311
                                    22        32        42        52        62        72        82        92  ||   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       
                                                                                                             95|                                                                                                                                                                                                                     
                                                                                                              98                                                                                                                                                                                                                     

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RVT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RVT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RVT)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M4K4_HUMAN | O958194obo 4obp 4obq 4u3y 4u3z 4u40 4u41 4u42 4u43 4u44 4u45 4zk5 4zp5 5di1 5j95

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4RVT)