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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN COQ9 IN COMPLEX WITH A PHOSPHOLIPID, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR5043
 
Authors :  F. Forouhar, S. Lew, J. Seetharaman, H. Wang, D. Lee, S. Kogan, M. Maglaq R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg), Mitochondrial Protein Partnership (Mpp)
Date :  02 Oct 14  (Deposition) - 22 Oct 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Northeast Structural Genomics Consortium, Nesg, All Alpha-Helical Protein, Ubiquinone Biosynthesis, Mitochondrial, Mitochondrial Protein Partnership, Mpp, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Lohman, F. Forouhar, E. T. Beebe, M. S. Stefely, C. E. Minogue, A. Ulbrich, J. A. Stefely, S. Sukumar, M. Luna-Sanchez, A. Jochem, S. Lew, J. Seetharaman, R. Xiao, H. Wang, M. S. Westphall, R. L. Wrobel, J. K. Everett, J. C. Mitchell, L. C. Lopez, J. J. Coon, L. Tong, D. J. Pagliarini
Mitochondrial Coq9 Is A Lipid-Binding Protein That Associates With Coq7 To Enable Coenzyme Q Biosynthesis.
Proc. Natl. Acad. Sci. Usa V. 111 E4697 2014
PubMed-ID: 25339443  |  Reference-DOI: 10.1073/PNAS.1413128111

(-) Compounds

Molecule 1 - UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL
    Chains: A, B
    Fragment: RESIDUES 84-318
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric/Biological Unit (2, 22)
No.NameCountTypeFull Name
1MSE21Mod. Amino AcidSELENOMETHIONINE
2PEF1Ligand/IonDI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:240 , TYR A:241 , ARG A:244 , ALA A:249 , ASN A:252 , SER A:262 , HOH A:518 , LEU B:217 , TYR B:241 , ARG B:244 , ASN B:252BINDING SITE FOR RESIDUE PEF A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RHP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RHP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RHP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RHP)

(-) Exons   (0, 0)

(no "Exon" information available for 4RHP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhp A  95 SEEQLQHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAAASmFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRmLIPYIEHWPRALSILmLPHNIPSSLSLLTSmVDDmWHYAGDQSTDFNWYTRRAmLAAIYNTTELVmmQDSSPDFEDTWRFLENRVNDAmNm 283
                                   104       114       124       134  |    144       154       164       174       184       194       204   |   214       224  |    234       244 |     254   ||  264       274      | |
                                                                    137-MSE                                                192-MSE         208-MSE        223-MSE                246-MSE     258-MSE                281-MSE
                                                                                                                                                              227-MSE                         259-MSE                 283-MSE


Chain B from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4rhp B  93 YESEEQLQHRILTAALEFVPAHGWTAEAIAEGAQSLGLSSAAASmFGKDGSELILHFVTQCNTRLTRVLEEEQKLVQLGQAEKRKTDQFLRDAVETRLRmLIPYIEHWPRALSILmLPHNIPSSLSLLTSmVDDmWHYAGDFNWYTRRAmLAAIYNTTELVmmQDSSPDFEDTWRFLENRVNDAmNmGTGEALVQGLmGAAVTLKNL 311
                                   102       112       122       132    |  142       152       162       172       182       192       202     | 212       222|   |  232||     246       256 ||    266       276    | |294       304       
                                                                      137-MSE                                                192-MSE         208-MSE        223-MSE   233|     246-MSE     258-MSE                281-MSE      302-MSE     
                                                                                                                                                                227-MSE238                  259-MSE                 283-MSE                
                                                                                                                                                                                                                     284|                  
                                                                                                                                                                                                                      293
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RHP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RHP)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

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