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(-) Description

Title :  CRYSTAL STRUCTURE OF A G-RICH RNA SEQUENCE BINDING FACTOR 1 (GRSF1) FROM HOMO SAPIENS AT 2.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
Date :  10 Jul 14  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,U,V,X
Biol. Unit 1:  A,U  (1x)
Biol. Unit 2:  B,V  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D,X  (1x)
Keywords :  Canonical Rna Binding Domain, Rrm_6, Pf14259, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Rna-Binding Protein, Rna Binding Protein- Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of A G-Rich Rna Sequence Binding Factor 1 (Grsf1) From Homo Sapiens At 2. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - G-RICH SEQUENCE FACTOR 1
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET22BNOHIS
    Expression System StrainBL21GOLD(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneGRSF1, NM_002092
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGRSF-1
 
Molecule 2 - RNA 5'-(*AP*GP*GP*GP*AP*UP)-3'
    ChainsU, V, X
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit ABCDUVX
Biological Unit 1 (1x)A   U  
Biological Unit 2 (1x) B   V 
Biological Unit 3 (1x)  C    
Biological Unit 4 (1x)   D  X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4QU7)

(-) Sites  (0, 0)

(no "Site" information available for 4QU7)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:476 -C:476
2B:476 -D:476

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:422 -Pro A:423
2Ala B:422 -Pro B:423
3Ala C:422 -Pro C:423
4Ala D:422 -Pro D:423

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QU7)

(-) Exons   (0, 0)

(no "Exon" information available for 4QU7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh.....eeeeeee....eeeeeeee..hhhhhhhhhhhh..ee..ee.eeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 4qu7 A 400 MHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 480
                                   409       419       429       439       449       459       469       479 

Chain B from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhh.....eeeeeee....eeeeeeee..hhhhhhhhhhhh..ee..ee.eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4qu7 B 400 MHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPK 478
                                   409       419       429       439       449       459       469         

Chain C from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhh.....eeeeeee....eeeeeeee..hhhhhhhhhhhh..ee..ee.eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4qu7 C 400 MHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPK 478
                                   409       419       429       439       449       459       469         

Chain D from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhhh.....eeeeeee....eeeeeeee..hhhhhhhhhhhh..ee..ee.eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4qu7 D 400 MHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSC 476
                                   409       419       429       439       449       459       469       

Chain U from PDB  Type:RNA  Length:3
                                   
                 4qu7 U 802 GGG 804

Chain V from PDB  Type:RNA  Length:4
                                    
                 4qu7 V 802 GGGA 805

Chain X from PDB  Type:RNA  Length:3
                                   
                 4qu7 X 802 GGG 804

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QU7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QU7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QU7)

(-) Gene Ontology  (14, 14)

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  Cis Peptide Bonds
    Ala A:422 - Pro A:423   [ RasMol ]  
    Ala B:422 - Pro B:423   [ RasMol ]  
    Ala C:422 - Pro C:423   [ RasMol ]  
    Ala D:422 - Pro D:423   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRSF1_HUMAN | Q128492lmi 4qu6

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