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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SPRY DOMAIN OF HUMAN HERC1
 
Authors :  A. Dong, J. Hu, X. Guan, A. Wernimont, Y. Li, C. Bountra, C. H. Arrowsmith A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Date :  07 Jul 14  (Deposition) - 07 Jan 15  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym./Biol. Unit :  A
Keywords :  Spry, B30. 2, Herc1, E3 Ubiquitin Ligase, Structural Genomics, Structural Genomics Consortium, Sgc, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hu, A. Dong, X. Guan, A. Wernimont, Y. Li, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong
Crystal Structure Of The Spry Domain Of Human Herc1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE E3 UBIQUITIN-PROTEIN LIGASE HERC1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SPRY DOMAIN (UNP RESIDUES 2035-2192)
    Gene: HERC1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HECT DOMAIN AND RCC1-LIKE DOMAIN-CONTAINING PROTEIN 1, P532, P619

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1ARF7Ligand/IonFORMAMIDE
2MSE5Mod. Amino AcidSELENOMETHIONINE
3UNX5Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:2085 , GLU A:2086 , ARG A:2112 , TYR A:2114 , TYR A:2176BINDING SITE FOR RESIDUE ARF A 2201
2AC2SOFTWARETYR A:2111 , LEU A:2128 , SER A:2129 , PHE A:2150 , LYS A:2152 , LYS A:2158 , HOH A:2443BINDING SITE FOR RESIDUE ARF A 2202
3AC3SOFTWARETHR A:2065 , TYR A:2072 , ARF A:2207 , HOH A:2385 , HOH A:2389 , HOH A:2438BINDING SITE FOR RESIDUE ARF A 2203
4AC4SOFTWAREPHE A:2136 , ALA A:2166 , ALA A:2167 , GLU A:2168 , ARG A:2192BINDING SITE FOR RESIDUE ARF A 2204
5AC5SOFTWAREGLY A:2034 , TYR A:2072 , ILE A:2186 , HOH A:2334 , HOH A:2385BINDING SITE FOR RESIDUE ARF A 2205
6AC6SOFTWAREASN A:2085 , GLU A:2086 , SER A:2177 , HOH A:2309BINDING SITE FOR RESIDUE ARF A 2206
7AC7SOFTWARECYS A:2042 , LEU A:2044 , GLY A:2054 , SER A:2055 , ARF A:2203 , HOH A:2438BINDING SITE FOR RESIDUE ARF A 2207

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QT6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:2095 -Pro A:2096

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QT6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QT6)

(-) Exons   (0, 0)

(no "Exon" information available for 4QT6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.eeee...eeee.....eeeee.......eeeeeeeeee.......eeeeee..............eeeee....eee...eeeee........eeeeeee....eeeeee.....eeee........eeeeee.......eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4qt6 A 2034 GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFNHRTTSDmWLYRAYSGNLYHNGEQTLTLSSFTQGDFITCVLDmEARTISFGKNGEEPKLAFEDVDAAELYPCVmFYSSNPGEKVKICDmQmR 2192
                                  2043      2053      2063      2073      2083      2093      2103    | 2113      2123      2133      2143      2153      2163      2173|     2183     | | 
                                                                                                   2108-MSE                           2143-MSE                       2174-MSE       2189-MSE
                                                                                                                                                                                      2191-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QT6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QT6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QT6)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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    Trp A:2095 - Pro A:2096   [ RasMol ]  
 

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 Related Entries

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        HERC1_HUMAN | Q15751: 4o2w

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