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(-) Description

Title :  MST3 IN COMPLEX WITH AT-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]-1H-PYRAZOL-3-YL}-1H-BENZIMIDAZOL-6-YL)METHYL]MORPHOLIN-4-IUM
 
Authors :  S. H. Olesen, C. Watts, J. -Y. Zhu, E. Schonbrunn
Date :  16 Jun 14  (Deposition) - 01 Jul 15  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Mst3, Stk24, Sterile 20-Like Kinase, Atp-Binding, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. H. Olesen, J. Y. Zhu, M. P. Martin, E. Schonbrunn
Discovery Of Diverse Small-Molecule Inhibitors Of Mammalian Sterile20-Like Kinase 3 (Mst3).
Chemmedchem V. 11 1137 2016
PubMed-ID: 27135311  |  Reference-DOI: 10.1002/CMDC.201600115

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE 24
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21 (DE3) RIL
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1-303
    GeneMST3, STK24, STK3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMAMMALIAN STE20-LIKE PROTEIN KINASE 3, MST-3, STE20-LIKE KINASE MST3, SERINE/THREONINE-PROTEIN KINASE 24 36 KDA SUBUNIT, MAMMALIAN STE20-LIKE PROTEIN KINASE 3 N-TERMINAL, MST3/N, SERINE/THREONINE-PROTEIN KINASE 24 12 KDA SUBUNIT, MAMMALIAN STE20- LIKE PROTEIN KINASE 3 C-TERMINAL, MST3/C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric/Biological Unit (5, 7)
No.NameCountTypeFull Name
135R1Ligand/Ion1-CYCLOPROPYL-3-{3-[5-(MORPHOLIN-4-YLMETHYL)-1H-BENZIMIDAZOL-2-YL]-1H-PYRAZOL-4-YL}UREA
2ACT2Ligand/IonACETATE ION
3CL1Ligand/IonCHLORIDE ION
4EDO2Ligand/Ion1,2-ETHANEDIOL
5TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:30 , GLY A:31 , LYS A:32 , VAL A:38 , ALA A:51 , GLU A:100 , LEU A:102 , GLY A:105 , ASP A:109 , LEU A:151 , TYR A:291 , LYS A:295 , HOH A:648BINDING SITE FOR RESIDUE 35R A 401
2AC2SOFTWARELYS A:29 , GLY A:31BINDING SITE FOR RESIDUE ACT A 402
3AC3SOFTWAREGLU A:22 , LYS A:257BINDING SITE FOR RESIDUE ACT A 403
4AC4SOFTWAREPRO A:80 , LYS A:84 , GLU A:157 , LYS A:159 , HOH A:588 , HOH A:665BINDING SITE FOR RESIDUE EDO A 404
5AC5SOFTWAREPRO A:246 , ASN A:256 , LYS A:272 , ARG A:276 , HOH A:560BINDING SITE FOR RESIDUE EDO A 405
6AC6SOFTWAREARG A:214BINDING SITE FOR RESIDUE CL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QMM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QMM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QMM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QMM)

(-) Exons   (0, 0)

(no "Exon" information available for 4QMM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:289
                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhheeeeeeeee....eeeeeee.....eeeeeeee......hhhhhhhhhhhhhh........eeeeeee..eeeeeee....eehhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qmm A   9 GLPGMQNLKADPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNtFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAKKTSYLTELIDRYKRWKAE 297
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288         
                                                                                                                                                                                                   178-TPO                                                                                                                   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QMM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QMM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QMM)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STK24_HUMAN | Q9Y6E03a7f 3a7g 3a7h 3a7i 3a7j 3ckw 3ckx 3zhp 4o27 4qml 4qmn 4qmo 4qmp 4qmq 4qms 4qmt 4qmu 4qmv 4qmw 4qmx 4qmy 4qmz 4qna 4qo9 4u8z 4w8d 4w8e

(-) Related Entries Specified in the PDB File

4qml 4qmn 4qmo 4qmp 4qmq 4qmr 4qms 4qmt 4qmu 4qmv 4qmw 4qmx 4qmy 4qmz