Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)

(-) Description

Title :  THE STRUCTURE OF MTDH-SND1 COMPLEX REVEALS NOVEL CANCER-PROMOTING INTERACTIONS
 
Authors :  F. Guo, V. Stanevich, L. Wan, K. Satyshur, Y. Kang, Y. Xing
Date :  16 Jun 14  (Deposition) - 08 Oct 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,F  (1x)
Biol. Unit 2:  B,G  (1x)
Biol. Unit 3:  C,H  (1x)
Biol. Unit 4:  D,I  (1x)
Biol. Unit 5:  E,J  (1x)
Keywords :  Sn Domains, Oligonucleotide/Oligosaccharide Binding-Fold (Ob-Fold), Dna/Rna-Binding, Mirna-Mediated Silencing, Nuclease, Breast Cancer, Tumorigenesis, Snd1, Mtdh, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Guo, L. Wan, A. Zheng, V. Stanevich, Y. Wei, K. A. Satyshur, M. Shen, W. Lee, Y. Kang, Y. Xing
Structural Insights Into The Tumor-Promoting Function Of Th Mtdh-Snd1 Complex.
Cell Rep V. 8 1704 2014
PubMed-ID: 25242325  |  Reference-DOI: 10.1016/J.CELREP.2014.08.033

(-) Compounds

Molecule 1 - STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQLINK
    Expression System StrainDH5ALPHA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentSND1, UNP RESIDUES 16-339
    GeneMETADHERIN (MTDH) AND STAPHYLOCOCCAL NUCLEASE DOMAIN CONTAINING 1 (SND1), SND1, TDRD11
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym100 KDA COACTIVATOR, EBNA2 COACTIVATOR P100, TUDOR DOMAIN- CONTAINING PROTEIN 11, P100 CO-ACTIVATOR
 
Molecule 2 - PROTEIN LYRIC
    ChainsF, G, H, I, J
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPQLINK
    Expression System StrainDH5ALPHA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentMTDH, UNP RESIDUES 386-407
    GeneAEG1, LYRIC, METADHERIN (MTDH), MTDH
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym3D3/LYRIC, ASTROCYTE ELEVATED GENE-1 PROTEIN, AEG-1, LYSINE- RICH CEACAM1 CO-ISOLATED PROTEIN, METADHERIN, METASTASIS ADHESION PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit ABCDEFGHIJ
Biological Unit 1 (1x)A    F    
Biological Unit 2 (1x) B    G   
Biological Unit 3 (1x)  C    H  
Biological Unit 4 (1x)   D    I 
Biological Unit 5 (1x)    E    J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 37)

Asymmetric Unit (4, 37)
No.NameCountTypeFull Name
1CS5Ligand/IonCESIUM ION
2GOL4Ligand/IonGLYCEROL
3MSE23Mod. Amino AcidSELENOMETHIONINE
4SO45Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION
2GOL-1Ligand/IonGLYCEROL
3MSE5Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION
2GOL2Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION
2GOL-1Ligand/IonGLYCEROL
3MSE5Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 4 (3, 7)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION
2GOL1Ligand/IonGLYCEROL
3MSE5Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 5 (3, 6)
No.NameCountTypeFull Name
1CS-1Ligand/IonCESIUM ION
2GOL1Ligand/IonGLYCEROL
3MSE4Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:170 , HIS A:171 , ILE A:173 , ASP A:175BINDING SITE FOR RESIDUE SO4 A 401
02AC2SOFTWAREMSE A:163 , SER A:165 , GLY A:167BINDING SITE FOR RESIDUE CS A 402
03AC3SOFTWAREARG B:174 , GLU B:200BINDING SITE FOR RESIDUE SO4 B 401
04AC4SOFTWAREMSE B:163 , SER B:165 , GLY B:167BINDING SITE FOR RESIDUE CS B 402
05AC5SOFTWAREHIS B:201 , ARG B:203 , ARG B:209BINDING SITE FOR RESIDUE GOL B 403
06AC6SOFTWAREHIS B:201 , VAL B:202 , LYS B:249 , GLU B:253BINDING SITE FOR RESIDUE GOL B 404
07AC7SOFTWAREARG C:83 , ARG C:174 , GLU C:200BINDING SITE FOR RESIDUE SO4 C 401
08AC8SOFTWAREMSE C:163 , SER C:165 , GLY C:167BINDING SITE FOR RESIDUE CS C 402
09AC9SOFTWAREARG D:83 , ARG D:174 , GLU D:200BINDING SITE FOR RESIDUE SO4 D 401
10BC1SOFTWAREMSE D:163 , SER D:165 , GLY D:167BINDING SITE FOR RESIDUE CS D 402
11BC2SOFTWAREHIS D:201 , ARG D:203 , ARG D:209BINDING SITE FOR RESIDUE GOL D 403
12BC3SOFTWARELEU E:59 , ALA E:60 , ARG E:83 , ARG E:174 , GLU E:200BINDING SITE FOR RESIDUE SO4 E 401
13BC4SOFTWAREMSE E:163 , SER E:165 , GLY E:167BINDING SITE FOR RESIDUE CS E 402
14BC5SOFTWAREHIS E:201 , ARG E:203 , ARG E:209BINDING SITE FOR RESIDUE GOL E 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QMG)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Leu A:213 -Pro A:214
2Leu B:213 -Pro B:214
3Leu C:213 -Pro C:214
4Leu D:213 -Pro D:214
5Leu E:213 -Pro E:214

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QMG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QMG)

(-) Exons   (0, 0)

(no "Exon" information available for 4QMG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhh.eeee.........eeeeee..eee.....................hhhhhhhhhhhhhh..eeeeeeeee.....eeeeeee......eehhhhhhhh..eee.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhh........hhhhhhhh.....eeeeeeeeee..eeeeee....eeeeeee..ee..........hhhhhhhhhhhhhh..eeeeeeeeee..eeeeeee....hhhhhhhhh...ee...hhhhh..hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qmg A  17 PTVQRGIIKmVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGmIYLGKDTNGENIAESLVAEGLATRREGmRANNPEQNRLSECEEQAKAAKKGmWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVmLSGIKCPTFRRTPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPT 333
                                    26        36        46        56        66        76        86        96       106    |  116       126       136  |    146       156      |166       176       186       196       206       216     | 226      |242       252       262       272       282       292       302       312       322       332 
                                    26-MSE                                                                              111-MSE                     139-MSE                 163-MSE                                                    222-MSE    233|                                                                                             
                                                                                                                                                                                                                                                   240                                                                                             

Chain B from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....eeeee.........eeeeee..eee.....................hhhhhhhhhhhhhh..eeeeeeeee.....eeeeeee......eehhhhhhhh..eee....hhhhhhhhhhhhhhh.hhhhh...hhhhh........hhhhhhhhh....eeeeeeeeee..eeeeee....eeeeeee..ee...ee....ee..hhhhhhhhhhhhhh..eeeeeeeeee..eeeeeee....hhhhhhhhhh..ee..........hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qmg B  17 PTVQRGIIKmVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGmIYLGKDTNGENIAESLVAEGLATRRNNPEQNRLSECEEQAKAAKKGmWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVmLSGIKCPTFRDGSETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPT 333
                                    26        36        46        56        66        76        86        96       106    |  116       126       136|      151       161 |     171       181       191       201       211       221|      231||     244       254       264       274       284       294       304       314       324         
                                    26-MSE                                                                              111-MSE                  136|                  163-MSE                                                    222-MSE   232|                                                                                                 
                                                                                                                                                  142                                                                                        236                                                                                                 

Chain C from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee.hhh.eeee.........eeeeee..ee..............hhhhhhhhhhhhhh..eeeeeeeee.....eeeeeee......eehhhhhhhh...ee.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhh........hhhhhhhhh....eeeeeeeeee..eeeeee....eeeeeee..ee...ee....ee..hhhhhhhhhhhhhh..eeeeeeeeee..eeeeeee....hhhhhhhhh...ee...hhhhh..hhhhhhhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qmg C  17 PTVQRGIIKmVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRADTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGmIYLGKDTNGENIAESLVAEGLATRREGmRANNPEQNRLSECEEQAKAAKKGmWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVmLSGIKCPTFRREAETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPT 333
                                    26        36        46        56      ||74        84        94       104      |114       124       134    |  144       154       164       174       184       194       204       214       224       234||     247       257       267       277       287       297       307       317       327      
                                    26-MSE                               63|                                    111-MSE                     139-MSE                 163-MSE                                                    222-MSE      235|                                                                                              
                                                                          72                                                                                                                                                                 239                                                                                              

Chain D from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee.hhh.eeee.........eeeeee..ee.......................hhhhhhhhhhhhh..eeeeeeeee.....eeeeeee......eehhhhhhhh...ee.......hhhhhhhhhhhhhhhhh.hhhhh...hhhhh........hhhhhhhh.....eeeeeeeeee..eeeeee....eeeeeee..ee...........hhhhhhhhhhhhhh..eeeeeeeeee..eeeeeee....hhhhhhhhh...ee..........hhhhhhhhhhhhhh..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qmg D  17 PTVQRGIIKmVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGmIYLGKDTNGENIAESLVAEGLATRREGmRANNPEQNRLSECEEQAKAAKKGmWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVmLSGIKCPTFRRETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAP 332
                                    26        36        46        56        66        76        86        96       106    |  116       126       136  |    146       156      |166       176       186       196       206       216     | 226       241       251       261       271       281       291       301       311       321       331 
                                    26-MSE                                                                              111-MSE                     139-MSE                 163-MSE                                                    222-MSE     234|                                                                                            
                                                                                                                                                                                                                                                    240                                                                                            

Chain E from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee....eeeee.........eeeeee..eee.....................hhhhhhhhhhhhhh..eeeeeeee......eeeeeee......eehhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhhhhh...hhhhh........hhhhhhhh.....eeeeeeeeee..eeeeee....eeeeeee..ee...ee....ee..hhhhhhhhhhhhhh..eeeeeeeeee..eeeeeeee..eehhhhhhhh...ee..........hhhhhhhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qmg E  17 PTVQRGIIKmVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGmIYLGKDTNGENIAESLVAEGLATRRNNPEQNRLSECEEQAKAAKKGmWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVmLSGIKCPTFRRGSETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPT 333
                                    26        36        46        56        66        76        86        96       106    |  116       126       136|      151       161 |     171       181       191       201       211       221|      231 ||    244       254       264       274       284       294       304       314       324         
                                    26-MSE                                                                              111-MSE                  136|                  163-MSE                                                    222-MSE    233|                                                                                                
                                                                                                                                                  142                                                                                         237                                                                                                

Chain F from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4qmg F 392 SDWNAPAEEWGNW 404
                                   401   

Chain G from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ............... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4qmg G 390 PNSDWNAPAEEWGNW 404
                                   399     

Chain H from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 4qmg H 388 ADPNSDWNAPAEEWGNW 404
                                   397       

Chain I from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ............... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4qmg I 391 NSDWNAPAEEWGNWV 405
                                   400     

Chain J from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4qmg J 392 SDWNAPAEEWGNW 404
                                   401   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QMG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QMG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QMG)

(-) Gene Ontology  (42, 46)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu A:213 - Pro A:214   [ RasMol ]  
    Leu B:213 - Pro B:214   [ RasMol ]  
    Leu C:213 - Pro C:214   [ RasMol ]  
    Leu D:213 - Pro D:214   [ RasMol ]  
    Leu E:213 - Pro E:214   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4qmg
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  LYRIC_HUMAN | Q86UE4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  SND1_HUMAN | Q7KZF4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  LYRIC_HUMAN | Q86UE4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SND1_HUMAN | Q7KZF4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SND1_HUMAN | Q7KZF42e6n 2hqe 2hqx 2o4x 3bdl 3omc 3omg 5m9o

(-) Related Entries Specified in the PDB File

2e6n 2hqe 2hqx 3bdl 3omc 3omg