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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN BAZ2B PHD ZINC FINGER IN THE FREE FORM
 
Authors :  C. Tallant, I. Van Molle, D. Y. Chirgadze, A. Ciulli
Date :  19 May 14  (Deposition) - 02 Jul 14  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Bromodomain Adjacent To Zinc Finger Domain Protein 2B, Kiaa1476, Transcriptional Regulation Interacting With Iswi, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Tallant, E. Valentini, O. Fedorov, L. Overvoorde, F. M. Ferguson, P. Filippakopoulos, D. I. Svergun, S. Knapp, A. Ciulli
Molecular Basis Of Histone Tail Recognition By Human Tip5 Phd Finger And Bromodomain Of The Chromatin Remodeling Complex Norc.
Structure V. 23 80 2015
PubMed-ID: 25533489  |  Reference-DOI: 10.1016/J.STR.2014.10.017

(-) Compounds

Molecule 1 - BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 2B
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)ROSETTA
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1928-1983
    GeneBAZ2B, KIAA1476
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHWALP4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B
Biological Unit 3 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1934 , CYS A:1937 , HIS A:1957 , CYS A:1960BINDING SITE FOR RESIDUE ZN A 2001
2AC2SOFTWARECYS A:1949 , CYS A:1952 , CYS A:1975 , CYS A:1978BINDING SITE FOR RESIDUE ZN A 2002
3AC3SOFTWARECYS B:1934 , CYS B:1937 , HIS B:1957 , CYS B:1960BINDING SITE FOR RESIDUE ZN B 2001
4AC4SOFTWARECYS B:1949 , CYS B:1952 , CYS B:1975 , CYS B:1978BINDING SITE FOR RESIDUE ZN B 2002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QF3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:1962 -Pro A:1963
2Arg B:1962 -Pro B:1963

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QF3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QF3)

(-) Exons   (0, 0)

(no "Exon" information available for 4QF3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:57
                                                                                          
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhh.eee......eee.................hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                4qf3 A 1927 MSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKAS 1983
                                  1936      1946      1956      1966      1976       

Chain B from PDB  Type:PROTEIN  Length:57
                                                                                          
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhh.eee......eee.................hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                4qf3 B 1927 MSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKAS 1983
                                  1936      1946      1956      1966      1976       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QF3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QF3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QF3)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAZ2B_HUMAN | Q9UIF82e7o 3g0l 3q2f 4cup 4cuq 4cur 4cus 4cut 4cuu 4ir3 4ir4 4ir5 4ir6 4nr9 4nra 4nrb 4nrc 4qc1 4qc3 4rvr 4xua 4xub 5cq3 5cq4 5cq5 5cq6 5cq7 5cq8 5cqa 5cu8 5cua 5cub 5cuc 5cud 5cue 5cug 5dyu 5dyx 5e73 5e74 5e9i 5e9k 5e9l 5e9m 5e9y 5l8t 5l8u 5l96 5l97 5l98 5l99 5mge 5mgf 5mgg 5pb7 5pb8 5pb9 5pba 5pbb 5pbc 5pbd 5pbe 5pbf 5pbg 5pbh 5pbi 5pbj 5pbk 5pbl 5pbm 5pbn 5pbo 5pbp 5pbq 5pbr 5pbs 5pbt 5pbu 5pbv 5pbw 5pbx 5pby 5pbz 5pc0 5pc1 5pc2 5pc3 5pc4 5pc5 5pc6 5pc7 5pc8 5pc9 5pca 5pcb 5pcc 5pcd 5pce 5pcf 5pcg 5pch 5pci 5pcj 5pck 5pcl 5pcm 5pcn 5pco 5pcp 5pcq 5pcr 5pcs 5pct 5pcu 5pcv 5pcw 5pcx 5pcz 5pd0 5pd1 5pd2 5pd3 5pd4 5pd5 5pd6 5pd7 5pd8 5pd9 5pda 5pdb 5pdc 5pdd 5pde 5pdf 5pdg 5pdh 5pdi 5pdj 5pdk 5pdl 5pdm 5pdn 5pdo 5pdp 5pdq 5pdr 5pds 5pdt 5pdu 5pdv 5pdw 5pdx 5pdy 5pdz 5pe0 5pe1 5pe2 5pe3 5pe4 5pe5 5pe6 5pe7 5pe8 5pe9 5pea 5peb 5pec 5ped 5pee 5pef 5peg 5peh 5pei 5pej 5pek 5pel 5pem 5pen 5peo 5peq 5per 5pes 5pet 5peu 5pev 5pew 5pex 5pey 5pez 5pf0 5pf1 5pf2 5pf3 5pf4 5pf5 5pf6 5pf7 5pf8 5pf9 5pfa 5pfb 5pfc 5pfd 5pfe 5pff 5pfg 5pfh 5pfi 5pfj 5pfl 5pfm 5pfn 5pfo 5pfp 5pfq 5pfr 5pfs 5pft 5pfu 5pfv 5pfw 5pfx 5pfy 5pfz 5pg0 5pg1 5pg2 5pg3 5pg4 5pg5 5pg6 5pg7 5pg8 5pg9 5pga 5pgb 5pgc 5pgd 5pge 5pgf 5pgg 5pgh 5pgi 5pgj 5pgk 5pgl 5pgn 5pgo 5pgp 5pgq 5pgr 5pgs 5pgt

(-) Related Entries Specified in the PDB File

4qf2