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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PLECTIN 1 AND 2 REPEATS OF THE HUMAN PERIPLAKIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR9083A
 
Authors :  S. Vorobiev, S. Lew, J. Seetharaman, H. Janjua, R. Xiao, P. T. O'Connell M. Maglaqui, D. Wang, J. K. Everett, T. B. Acton, G. T. Montelione, L. To J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  07 Apr 14  (Deposition) - 18 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.64
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Periplakin, Plectin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, S. Lew, J. Seetharaman, H. Janjua, R. Xiao, P. T. O'Connell, M. Maglaqui, D. Wang, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Plectin 1 And 2 Repeats Of Human Periplakin.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PERIPLAKIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HR9083A-1655-1756-15.6
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PET15_NESG
    Fragment: UNP RESIDUES 1655-1756
    Gene: KIAA0568, PPL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 190 KDA PARANEOPLASTIC PEMPHIGUS ANTIGEN, 195 KDA CORNIFIED ENVELOPE PRECURSOR PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4Q28)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q28)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q28)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q28)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q28)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q28)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee......eehhhhhhhh...hhhhhhhhhh..eeeeeeeee....eeeeeee....eeeehhhhhhh...hhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                4q28 A 1645 GHHHHHHSHmRRSIVVIHPDTGRELSPEEAHRAGLIDWNmFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAQYDRYVNKDmSIQELAVLVSG 1754
                                  1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754
                                  1654-MSE                      1684-MSE                                                   1743-MSE       


Chain B from PDB  Type:PROTEIN  Length:110
                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee......eehhhhhhhhh..hhhhhhhhhhhheeeeeeeeee..eeeeeeee....eeeehhhhhhh...hhhhhhhhhh...hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                4q28 B 1645 GHHHHHHSHmRRSIVVIHPDTGRELSPEEAHRAGLIDWNmFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAQYDRYVNKDmSIQELAVLVSG 1754
                                  1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754
                                  1654-MSE                      1684-MSE                                                   1743-MSE       


Chain C from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee......eehhhhhhhh...hhhhhhhhhhh.eeeeeeeeee..eeeeeeee.....eeehhhhhhh...hhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                4q28 C 1645 GHHHHHHSHmRRSIVVIHPDTGRELSPEEAHRAGLIDWNmFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAQYDRYVNKDmSIQELAVLVS 1753
                                  1654      1664      1674      1684      1694      1704      1714      1724      1734      1744         
                                  1654-MSE                      1684-MSE                                                   1743-MSE      


Chain D from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeee......eehhhhhhhh...hhhhhhhhhhhheeeeeeeee....eeeeeee.....eeehhhhhhh...hhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                4q28 D 1645 GHHHHHHSHmRRSIVVIHPDTGRELSPEEAHRAGLIDWNmFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAQYDRYVNKDmSIQELAVLVS 1753
                                  1654      1664      1674      1684      1694      1704      1714      1724      1734      1744         
                                  1654-MSE                      1684-MSE                                                   1743-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q28)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q28)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q28)

(-) Gene Ontology  (12, 12)

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