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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF THE LZII FRAGMENT (ANTI-PARALLEL ORIENTATION) FROM JIP3
 
Authors :  P. Llinas, Menetrey J.
Date :  24 Mar 14  (Deposition) - 10 Jun 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Leucine Zipper, Scaffold Protein, Axonal Transport, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Llinas, M. Chenon, T. Q. Nguyen, C. Moreira, A. De Regibus, A. Coquard, M. J. Ramos, R. Guerois, P. A. Fernandes, J. Menetrey
Structure Of A Truncated Form Of Leucine Zipper Ii Of Jip3 Reveals An Unexpected Antiparallel Coiled-Coil Arrangement.
Acta Crystallogr F Struct V. 72 198 2016 Biol Commun
PubMed-ID: 26919523  |  Reference-DOI: 10.1107/S2053230X16001576

(-) Compounds

Molecule 1 - C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 3
    ChainsA, B, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGST//1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentLEUCINE ZIPPER II FRAGMENT
    GeneMAPK8IP3, JIP3, KIAA1066
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymJIP-3, JNK-INTERACTING PROTEIN 3, JNK MAP KINASE SCAFFOLD PROTEIN 3, MITOGEN-ACTIVATED PROTEIN KINASE 8-INTERACTING PROTEIN 3

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)AB 
Biological Unit 2 (2x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2GAI2Ligand/IonGUANIDINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2GAI2Ligand/IonGUANIDINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2GAI-1Ligand/IonGUANIDINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:475 , GAI B:501BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREASN A:442 , ASN C:474BINDING SITE FOR RESIDUE EDO A 502
3AC3SOFTWAREARG A:459BINDING SITE FOR RESIDUE EDO A 503
4AC4SOFTWAREGLN A:455 , ARG A:459 , HOH A:670 , LYS B:469 , HOH B:627 , HOH B:634BINDING SITE FOR RESIDUE EDO A 504
5AC5SOFTWARESO4 A:501 , ASP B:443 , LEU B:444 , LYS B:447 , HOH C:669BINDING SITE FOR RESIDUE GAI B 501
6AC6SOFTWAREASN B:442 , ASP B:443 , ARG B:485 , HOH B:648 , HOH B:651BINDING SITE FOR RESIDUE GAI B 502
7AC7SOFTWARELYS A:469 , GLN B:455 , ARG B:459 , HOH B:603 , HOH B:650BINDING SITE FOR RESIDUE EDO B 503
8AC8SOFTWARELYS C:447 , ARG C:475 , HOH C:662 , HOH C:664BINDING SITE FOR RESIDUE SO4 C 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PXJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PXJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PXJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PXJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4PXJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:56
                                                                                        
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 4pxj A 430 PEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKR 485
                                   439       449       459       469       479      

Chain B from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4pxj B 430 PEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKRV 486
                                   439       449       459       469       479       

Chain C from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4pxj C 426 GAMDPEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKRV 486
                                   435       445       455       465       475       485 

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PXJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PXJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PXJ)

(-) Gene Ontology  (26, 26)

Asymmetric Unit(hide GO term definitions)

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