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(-) Description

Title :  STRUCTURAL BASIS OF SOSS1 IN COMPLEX WITH A 35NT SSDNA
 
Authors :  W. Ren, Q. Sun, X. Tang, H. Song
Date :  04 Feb 14  (Deposition) - 16 Apr 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,L
Keywords :  Soss1 Complex, Dna Double-Strand Breaks, Homologous Recombination, Ssdna-Binding Protein, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Ren, H. Chen, Q. Sun, X. Tang, S. C. Lim, J. Huang, H. Song
Structural Basis Of Soss1 Complex Assembly And Recognition Of Ssdna.
Cell Rep V. 6 982 2014
PubMed-ID: 24630995  |  Reference-DOI: 10.1016/J.CELREP.2014.02.020

(-) Compounds

Molecule 1 - DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3')
    ChainsL
    EngineeredYES
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES
 
Molecule 2 - INTEGRATOR COMPLEX SUBUNIT 3
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneINTS3, C1ORF193, C1ORF60
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINT3,SOSS COMPLEX SUBUNIT A,SENSOR OF SINGLE-STRAND DNA COMPLEX SUBUNIT A,SENSOR OF SSDNA SUBUNIT A
 
Molecule 3 - SOSS COMPLEX SUBUNIT B1
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNABP2, OBFC2B, SSB1, LP3587
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNUCLEIC ACID-BINDING PROTEIN 2, OLIGONUCLEOTIDE/OLIGOSACCHARIDE-BINDING FOLD-CONTAINING PROTEIN 2B, SENSOR OF SINGLE-STRAND DNA COMPLEX SUBUNIT B1,SENSOR OF SSDNA SUBUNIT B1,SOSS-B1,SINGLE-STRANDED DNA-BINDING PROTEIN 1,HSSB1
 
Molecule 4 - SOSS COMPLEX SUBUNIT C
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneINIP, C9ORF80, SSBIP1, HSPC043, HSPC291
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymINTS3- AND NABP-INTERACTING PROTEIN,SENSOR OF SINGLE-STRAND DNA COMPLEX SUBUNIT C,SENSOR OF SSDNA SUBUNIT C,SOSS-C,SINGLE- STRANDED DNA-BINDING PROTEIN-INTERACTING PROTEIN 1,HSSBIP1

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4OWW)

(-) Sites  (0, 0)

(no "Site" information available for 4OWW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OWW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr B:32 -Lys B:33
2Val B:105 -Pro B:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OWW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OWW)

(-) Exons   (0, 0)

(no "Exon" information available for 4OWW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhh...hhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oww A  35 RLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFC 497
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494   

Chain B from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh......eeeeeeeeee...........eeeeeeee..eeeeeeeehhhhhhh...eeeeeeeeeeeee..eeeeeeeeeeeeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4oww B   5 TFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEP 111
                                    14        24        34        44        54        64        74        84        94       104       

Chain C from PDB  Type:PROTEIN  Length:39
                                                                       
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eee........eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 4oww C  62 QHIAAQQKAALQHAHAHSSGYFITQDSAFGNLILPVLPR 100
                                    71        81        91         

Chain L from PDB  Type:DNA  Length:6
                                      
                 4oww L   2 TTTTTT   7

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OWW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OWW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OWW)

(-) Gene Ontology  (23, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4oww)
 
  Cis Peptide Bonds
    Thr B:32 - Lys B:33   [ RasMol ]  
    Val B:105 - Pro B:106   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INT3_HUMAN | Q68E014owt 4owx
        SOSB1_HUMAN | Q9BQ154owt 4owx 5d8e 5d8f
        SOSSC_HUMAN | Q9NRY24owt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4OWW)