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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF P100/NF-KB2
 
Authors :  Z. H. Tao, D. B. Huang, A. Fusco, K. Gupta, C. F. Ware, G. V. Duynne
Date :  13 Feb 14  (Deposition) - 14 Jan 15  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (2x)
Keywords :  Nf-Kb Transcription Factor, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Tao, A. Fusco, D. B. Huang, K. Gupta, D. Young Kim, C. F. Ware, G. D. Van Duyne, G. Ghosh
P100/I Kappa B Delta Sequesters And Inhibits Nf-Kappa B Through Kappabsome Formation.
Proc. Natl. Acad. Sci. Usa V. 111 15946 2014
PubMed-ID: 25349408  |  Reference-DOI: 10.1073/PNAS.1408552111

(-) Compounds

Molecule 1 - NUCLEAR FACTOR NF-KAPPA-B P100 SUBUNIT
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNFKB2, LYT10
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDNA-BINDING FACTOR KBF2, H2TF1, LYMPHOCYTE TRANSLOCATION CHROMOSOME 10 PROTEIN, NUCLEAR FACTOR OF KAPPA LIGHT POLYPEPTIDE GENE ENHANCER IN B-CELLS 2, ONCOGENE LYT-10, LYT10, NUCLEAR FACTOR NF- KAPPA-B P52 SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:611 , ARG A:685 , LYS A:741BINDING SITE FOR RESIDUE SO4 A 801
2AC2SOFTWAREARG A:635 , THR A:665 , ALA A:667 , ASN A:669BINDING SITE FOR RESIDUE SO4 A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OT9)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4OT9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh.hhhhhhhhhhhhhh....hhhhh......hhhhhhhhh.hhhhhhhhhhh............hhhhhhh.....hhhhhhhhhh.hhhhh............hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhh........................hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ot9 A 435 QAPEMLQRAREYNARLFGLAQRSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEP 756
                                   444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694      |728       738       748        
                                                                                                                                                                                                                                                                                                    701|                              
                                                                                                                                                                                                                                                                                                     726                              

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OT9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OT9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OT9)

(-) Gene Ontology  (33, 33)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NFKB2_HUMAN | Q006531a3q 2d96 3do7

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