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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCLEAVED GUINEA PIG L-ASPARAGINASE TYPE III
 
Authors :  A. M. Schalk, A. Lavie
Date :  18 Dec 13  (Deposition) - 09 Apr 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Schalk, A. Lavie
Structural And Kinetic Characterization Of Guinea Pig L-Asparaginase Type Iii.
Biochemistry V. 53 2318 2014
PubMed-ID: 24669941  |  Reference-DOI: 10.1021/BI401692V

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14B
    Expression System Strain: C41
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 24-332
    Gene: LOC100713636
    Organism Common: GUINEA PIG
    Organism Scientific: CAVIA PORCELLUS
    Organism Taxid: 10141

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:55 , GLU A:56 , ASP A:58 , PHE A:61 , ALA A:63 , HIS A:65BINDING SITE FOR RESIDUE NA A 401
2AC2SOFTWARELEU B:55 , GLU B:56 , ASP B:58 , PHE B:61 , ALA B:63 , HIS B:65BINDING SITE FOR RESIDUE NA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O47)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O47)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O47)

(-) Exons   (0, 0)

(no "Exon" information available for 4O47)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..................eeeeeee....eeeeeeee....hhhhhhhhhhhhh...eeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeee....................eeee...eeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeeeee....eeeee......eeeee..eeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o47 A   0 HMEPVLVVHGGGISCERRQRVRQGVIRAASLGHGVLRAGGSAVDAVEAAVAALEDDAEFNAGHGSVLTENGDVEMDASIMDGRDLGAGAVSAVRCIANPIKLARLVMDKTPHCFLTGQGAAKFAADMGISEIPGEQLVTERNRKRLEKERQLGTVGAVALDCKGNVAYATSTGGIVNKMTGRVGDSPCIGSGGYADNSIGAVSTTGHGESILKVNLARLALFHLEQGGKTVDEAADLALGYMKSRLKGLGGLILVSRTGEWVAKWTSTSMPWAAVKGGKVHAGIDLNDTTVTDLC 309
                                     9 ||     22        32        42        52        62        72        82        92       102       112       122       132       142       152||     174       184       194       204       214       224       234       244       254       264       274       284       294       304     
                                      11|                                                                                                                                       153|                                                                                                                                               
                                       15                                                                                                                                        166                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:290
                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..................eeeeeee....eeeeeeee....hhhhhhhhhhhhh...eeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeee.....eeeeeee....................eeee...eeeeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..eeeeeee....eeeee......eeeee..eeeee......eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o47 B   0 HMEPVLVVHGGGRRQRVRQGVIRAASLGHGVLRAGGSAVDAVEAAVAALEDDAEFNAGHGSVLTENGDVEMDASIMDGRDLGAGAVSAVRCIANPIKLARLVMDKTPHCFLTGQGAAKFAADMGISEIPGEQLVTERNRKRLEKERLGTVGAVALDCKGNVAYATSTGGIVNKMTGRVGDSPCIGSGGYADNSIGAVSTTGHGESILKVNLARLALFHLEQGGKTVDEAADLALGYMKSRLKGLGGLILVSRTGEWVAKWTSTSMPWAAVKGGKVHAGIDLNDTTVTDLC 309
                                     9 ||     26        36        46        56        66        76        86        96       106       116       126       136       146     ||169       179       189       199       209       219       229       239       249       259       269       279       289       299       309
                                      11|                                                                                                                                  152|                                                                                                                                               
                                       19                                                                                                                                   166
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O47)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O47)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O47)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        H0VQC8_CAVPO | H0VQC8: 4o48

(-) Related Entries Specified in the PDB File

4o48