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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PGK1 3PG AND TERAZOSIN(TZN) TERNARY COMPLEX
 
Authors :  X. L. Li, L. I. Finci, J. H. Wang
Date :  18 Dec 13  (Deposition) - 29 Oct 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Enzyme-Drug Complex, Transferase-Transferase Activitor Complex, Transferase-Transferase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Chen, C. Zhao, X. Li, T. Wang, Y. Li, C. Cao, Y. Ding, M. Dong, L. Finci, J. H. Wang, X. Li, L. Liu
Terazosin Activates Pgk1 And Hsp90 To Promote Stress Resistance.
Nat. Chem. Biol. V. 11 19 2015
PubMed-ID: 25383758  |  Reference-DOI: 10.1038/NCHEMBIO.1657

(-) Compounds

Molecule 1 - PHOSPHOGLYCERATE KINASE 1
    Chains: A
    EC Number: 2.7.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PROTEIN
    Gene: PGK1, PGKA, MIG10, OK/SW-CL.110
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CELL MIGRATION-INDUCING GENE 10 PROTEIN, PRIMER RECOGNITION PROTEIN 2, PRP 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
13PG1Ligand/Ion3-PHOSPHOGLYCERIC ACID
2TZN1Ligand/Ion[4-(4-AMINO-6,7-DIMETHOXYQUINAZOLIN-2-YL)PIPERAZIN-1-YL][(2R)-TETRAHYDROFURAN-2-YL]METHANONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:237 , GLY A:238 , THR A:254 , LEU A:256 , PHE A:291 , MET A:311 , GLY A:312 , LEU A:313 , ASP A:314 , PRO A:338 , GLY A:340 , VAL A:341 , HOH A:609BINDING SITE FOR RESIDUE TZN A 501
2AC2SOFTWAREASP A:23 , ASN A:25 , ARG A:38 , HIS A:62 , ARG A:65 , ARG A:122 , GLY A:166 , THR A:167 , ARG A:170 , HOH A:705 , HOH A:707 , HOH A:784BINDING SITE FOR RESIDUE 3PG A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O33)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:205 -Pro A:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O33)

(-) Exons   (0, 0)

(no "Exon" information available for 4O33)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:417
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh.....eeeee......ee..ee..hhhhhhhhhhhhhhhhh...eeeee................hhhhhhhhhhhhh...ee.....hhhhhhhhhh....eeee..hhhhh.....eee.....eee.hhhhhhhhhhhhhhh..eeee.hhhhh...hhhhhh.....eeehhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhh....eeee...hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.eee...eeeee........eeeee.........eeeeehhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhh.......ee..hhhhhhhhhh...hhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o33 A   0 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITTIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI 416
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O33)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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  4o33
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  PGK1_HUMAN | P00558
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  2.7.2.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PGK1_HUMAN | P00558: 2wzb 2wzc 2wzd 2x13 2x14 2x15 2xe6 2xe7 2xe8 2y3i 2ybe 2zgv 3c39 3c3a 3c3b 3c3c 3zoz 4axx

(-) Related Entries Specified in the PDB File

4o3f