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(-) Description

Title :  STRUCTURE OF THE KNL1/NSL1 COMPLEX
 
Authors :  A. Petrovic, S. Mosalaganti, J. Keller, M. Mattiuzzo, K. Overlack, S. Wohlgemuth, S. Pasqualato, S. Raunser, A. Musacchio
Date :  31 Oct 13  (Deposition) - 19 Mar 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Rwd Domain, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Petrovic, S. Mosalaganti, J. Keller, M. Mattiuzzo, K. Overlack, V. Krenn, A. De Antoni, S. Wohlgemuth, V. Cecatiello, S. Pasqualato, S. Raunser, A. Musacchio
Modular Assembly Of Rwd Domains On The Mis12 Complex Underlies Outer Kinetochore Organization.
Mol. Cell V. 53 591 2014
PubMed-ID: 24530301  |  Reference-DOI: 10.1016/J.MOLCEL.2014.01.019

(-) Compounds

Molecule 1 - PROTEIN CASC5
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentKNL1 C-TERMINAL DOMAIN, UNP RESIDUES 2117-2337
    GeneCASC5, KIAA1570, KNL1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymALL1-FUSED GENE FROM CHROMOSOME 15Q14 PROTEIN, AF15Q14, BUB- LINKING KINETOCHORE PROTEIN, BLINKIN, CANCER SUSCEPTIBILITY CANDIDATE GENE 5 PROTEIN, CANCER/TESTIS ANTIGEN 29, CT29, KINETOCHORE-NULL PROTEIN 1, PROTEIN D40/AF15Q14
 
Molecule 2 - KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG
    ChainsC, D
    EngineeredYES
    FragmentNSL1 C-TERMINAL TAIL, UNP RESIDUES 256-281
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsSYNTHETIC PEPTIDE OF A NATURAL HUMAN PROTEIN
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A C 
Biological Unit 2 (1x) B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4NF9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NF9)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Tyr A:2262 -Pro A:2263
2Phe B:2141 -Pro B:2142
3Tyr B:2262 -Pro B:2263

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NF9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NF9)

(-) Exons   (0, 0)

(no "Exon" information available for 4NF9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhh...eeeeee...eeeeee....eeeeeee.....hhhhhhhhhh.eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeee....eeeeeeee...........eeeeeee...hhhhhhhhhh......hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4nf9 A 2096 RTEELLDQLSLSEWDVVEWSDDQAVFTFVYDTIQLTITFEESVVGFPFLDKRYRKIVDVNFQSLLDEDQAPPSSLLVHKLIFQYVEEKESWKKTCTTQHQLPKmLEEFSLVVHHCRLLGEEIEYLKRWGPNYNLmNIDINNNELRLLFSSSAAFAKFEITLFLSAYYPSVPLPSTIQNHVGNTSQDDIATILSKVPLENNYLKNVVKQIYQDLFQD 2311
                                  2105      2115      2125      2135      2145      2155      2165      2175      2185      2195   |  2205      2215      2225    | 2235      2245      2255      2265      2275      2285      2295      2305      
                                                                                                                                2199-MSE                       2230-MSE                                                                             

Chain B from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...eeeeee....eeeeeee..........hhhhh.eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeee....eeeeeeee...........eeeeeee...hhhhhhhhhh......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4nf9 B 2105 SLSEWDVVEWSDDQAVFTFVYDTIQLTITFEESVVGFPFLDKRYRKIVDVNFQSLLDEDQAPPSSLLVHKLIFQYVEEKESWKKTCTTQHQLPKmLEEFSLVVHHCRLLGEEIEYLKRWGPNYNLmNIDINNNELRLLFSSSAAFAKFEITLFLSAYYPSVPLPSTIQNHVGNTSQDDIATILSKVPLENNYLKNVVKQIYQDLFQD 2311
                                  2114      2124      2134      2144      2154      2164      2174      2184      2194    | 2204      2214      2224     |2234      2244      2254      2264      2274      2284      2294      2304       
                                                                                                                       2199-MSE                       2230-MSE                                                                             

Chain C from PDB  Type:PROTEIN  Length:9
                                          
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                4nf9 C  266 QRKWYPLRP  274

Chain D from PDB  Type:PROTEIN  Length:9
                                          
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                4nf9 D  266 QRKWYPLRP  274

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NF9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NF9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NF9)

(-) Gene Ontology  (22, 33)

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  Cis Peptide Bonds
    Phe B:2141 - Pro B:2142   [ RasMol ]  
    Tyr A:2262 - Pro A:2263   [ RasMol ]  
    Tyr B:2262 - Pro B:2263   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KNL1_HUMAN | Q8NG313si5 4a1g 4nfa
        NSL1_HUMAN | Q96IY15lsi 5lsj 5lsk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NF9)