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(-) Description

Title :  CRYSTAL STRUCTURE OF GSK6157 BOUND TO PERK (R587-R1092, DELETE A660-T867) AT 2.34A RESOLUTION
 
Authors :  R. T. Gampe, J. M. Axten
Date :  12 Aug 13  (Deposition) - 03 Sep 14  (Release) - 03 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Deletion Mutant, Catalytic Domain, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Axten, S. P. Romeril, A. Shu, J. Ralph, J. R. Medina, Y. Feng, W. H. H. Li, S. W. Grant, D. A. Heerding, E. Minthorn, T. Mencken, N. Gaul A. Goetz, T. Stanley, A. M. Hassell, R. T. Gampe, C. Atkins, R. Kumar
Discovery Of 5-{4-Fluoro-1-[(6-Methyl-2-Pyridinyl)Acetyl]-2, 3-Dihydro-1H Indol-5-Yl}-7-Methyl-7H-Pyrrolo[2, 3-D]Pyrimidin-4-Amine (Gsk2656157), A Potent And Selective Perk Inhibitor Selecte For Preclinical Development
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 3
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 588-660,869-1093
    GeneEIF2AK3, PEK, PERK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPKR-LIKE ENDOPLASMIC RETICULUM KINASE, PERK, PANCREATIC EIF2-ALPHA KINASE, HSPEK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
127D1Ligand/Ion1-[5-(4-AMINO-7-METHYL-7H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-4-FLUORO-1H-INDOL-1-YL]-2-(6-METHYLPYRIDIN-2-YL)ETHANONE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:598 , VAL A:606 , ALA A:619 , LEU A:642 , VAL A:651 , TYR A:653 , GLN A:888 , CYS A:890 , PHE A:943 , GLY A:953 , ASP A:954 , PHE A:955 , HOH A:1322 , HOH A:1323 , HOH A:1324BINDING SITE FOR RESIDUE 27D A 1101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M7I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M7I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M7I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M7I)

(-) Exons   (0, 0)

(no "Exon" information available for 4M7I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhheeeeeeee...eeeeeee.....eeeeeeee...hhhhhhhhhhhhhhhh.........eeeeeee...eeeeeee.....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee............hhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4m7i A  586 GRYLTDFEPIQCLGRFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL 1079
                                   595    || 607       617       627       637       647       657  ||   886       896       906       916       926       936       946       956 ||    992      1002      1012      1022      1032      1042      1052      1062      1072       
                                        600|                                                      660|                                                                           958|                                                                                              
                                         603                                                       880                                                                            985                                                                                              

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M7I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M7I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M7I)

(-) Gene Ontology  (58, 58)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E2AK3_HUMAN | Q9NZJ54g31 4g34 4x7h 4x7j 4x7k 4x7l 4x7n 4x7o 4yzs 5sv7

(-) Related Entries Specified in the PDB File

3qd2 CRYSTAL STRUCTURE OF MOUSE PERK KINASE DOMAIN
4g31 CRYSTAL STRUCTURE OF GSK6414 BOUND TO PERK (R587-R1092, DELETE A660-T867)@2.28A RESOLUTION
4g34 CRYSTAL STRUCTURE OF GSK6924 BOUND TO PERK (R587-R1092, DELETE A660-T867)@2.70A RESOLUTION