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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN DIHYDROFOLATE REDUCTASE (DHFR) BOUND TO NADP+ AND FOLATE
 
Authors :  G. Bhabha, D. C. Ekiert, P. E. Wright, I. A. Wilson
Date :  09 Aug 13  (Deposition) - 25 Sep 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Nadph Binding, Folate Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Bhabha, D. C. Ekiert, M. Jennewein, C. M. Zmasek, L. M. Tuttle, G. Kroon, H. J. Dyson, A. Godzik, I. A. Wilson, P. E. Wright
Divergent Evolution Of Protein Conformational Dynamics In Dihydrofolate Reductase.
Nat. Struct. Mol. Biol. V. 20 1243 2013
PubMed-ID: 24077226  |  Reference-DOI: 10.1038/NSMB.2676

(-) Compounds

Molecule 1 - DIHYDROFOLATE REDUCTASE
    ChainsA
    EC Number1.5.1.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21A
    Expression System StrainBL21(DE3)/PDNAY
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneDHFR
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1FOL1Ligand/IonFOLIC ACID
2GOL1Ligand/IonGLYCEROL
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:7 , VAL A:8 , ALA A:9 , LEU A:22 , GLU A:30 , PHE A:31 , ARG A:32 , PHE A:34 , GLN A:35 , ASN A:64 , LEU A:67 , ARG A:70 , VAL A:115 , THR A:136 , NAP A:202 , HOH A:314 , HOH A:324 , HOH A:361 , HOH A:380 , HOH A:435BINDING SITE FOR RESIDUE FOL A 201
2AC2SOFTWAREVAL A:8 , ALA A:9 , ILE A:16 , GLY A:17 , GLY A:20 , ASP A:21 , LEU A:22 , GLY A:53 , LYS A:54 , LYS A:55 , THR A:56 , LEU A:75 , SER A:76 , ARG A:77 , GLU A:78 , ARG A:91 , VAL A:115 , GLY A:117 , SER A:118 , SER A:119 , TYR A:121 , THR A:146 , FOL A:201 , HOH A:324 , HOH A:329 , HOH A:340 , HOH A:360 , HOH A:382 , HOH A:414 , HOH A:434 , HOH A:451 , HOH A:465BINDING SITE FOR RESIDUE NAP A 202
3AC3SOFTWARESER A:3 , ASN A:5 , MET A:111 , LYS A:132 , PHE A:134 , TYR A:162 , ASP A:186 , HOH A:365 , HOH A:368 , HOH A:440BINDING SITE FOR RESIDUE GOL A 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M6K)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:65 -Pro A:66
2Gly A:116 -Gly A:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M6K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M6K)

(-) Exons   (0, 0)

(no "Exon" information available for 4M6K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains d4m6ka_ A: Dihydrofolate reductases, eukaryotic type                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee...eee.........hhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhh.....eeeee............eee.hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhh...eeeeeeee.......ee.........ee...........eee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m6k A   1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND 186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M6K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M6K)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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    Arg A:65 - Pro A:66   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DYR_HUMAN | P003741boz 1dhf 1dlr 1dls 1drf 1hfp 1hfq 1hfr 1kms 1kmv 1mvs 1mvt 1ohj 1ohk 1pd8 1pd9 1pdb 1s3u 1s3v 1s3w 1u71 1u72 1yho 2c2s 2c2t 2dhf 2w3a 2w3b 2w3m 3eig 3f8y 3f8z 3f91 3fs6 3ghc 3ghv 3ghw 3gi2 3gyf 3l3r 3n0h 3ntz 3nu0 3nxo 3nxr 3nxt 3nxv 3nxx 3nxy 3nzd 3oaf 3s3v 3s7a 4ddr 4g95 4kak 4kbn 4kd7 4keb 4kfj 4m6j 4m6l 4qhv 4qjc 5hpb 5hqy 5hqz 5hsr 5hsu 5ht4 5ht5 5hui 5hvb 5hve

(-) Related Entries Specified in the PDB File

4m6j 4m6l