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(-) Description

Title :  ISOLATED SERK1 CO-RECEPTOR ECTODOMAIN AT HIGH RESOLUTION
 
Authors :  J. Santiago, C. Henzler, M. Hothorn
Date :  22 Jul 13  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Lrr-Domain, Membrane Co-Receptor, Brassinosteroid Binding, N- Glycosylation, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Santiago, C. Henzler, M. Hothorn
Molecular Mechanism For Plant Steroid Receptor Activation B Somatic Embryogenesis Co-Receptor Kinases.
Science V. 341 889 2013
PubMed-ID: 23929946  |  Reference-DOI: 10.1126/SCIENCE.1242468

(-) Compounds

Molecule 1 - SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Plasmid: PBAC-6 MOD.
    Expression System Strain: TNAO38
    Expression System Taxid: 7111
    Expression System Vector Type: PLASMID/BACULOVIRUS
    Fragment: RECEPTOR ECTODOMAIN/LRR-DOMAIN (UNP RESIDUES 29-788)
    Gene: AT1G71830, F14O23.21, F14O23_24, SERK1
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Strain: COL 0
    Synonym: ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:104 , GLN A:168 , NAG A:1001 , FUC A:1003 , HOH A:1151 , HOH A:1155 , HOH A:1240BINDING SITE FOR RESIDUE NAG A 1000
2AC2SOFTWARENAG A:1000 , BMA A:1002 , FUC A:1003 , HOH A:1151BINDING SITE FOR RESIDUE NAG A 1001
3AC3SOFTWARENAG A:1001BINDING SITE FOR RESIDUE BMA A 1002
4AC4SOFTWAREASN A:78 , GLU A:80 , SER A:102 , ASN A:104 , NAG A:1000 , NAG A:1001 , HOH A:1162 , HOH A:1173BINDING SITE FOR RESIDUE FUC A 1003
5AC5SOFTWARELEU A:126 , ASN A:150 , ASN A:174 , ASN A:197BINDING SITE FOR RESIDUE NAG A 1004
6AC6SOFTWAREASN A:69 , MET A:159 , THR A:162 , ASN A:184BINDING SITE FOR RESIDUE NAG A 1005

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:58 -A:65
2A:202 -A:210

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LSC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LSC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LSC)

(-) Exons   (0, 0)

(no "Exon" information available for 4LSC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:186
                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhee.....................eee.....eeeee......ee..hhhhhhh....eee......ee....hhhhh....eee....eeee..hhhhhhh....eee....eeee..hhhhhhh....eee....eeeee...hhhhhhhhhhhh....eee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lsc A  27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGDLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTQITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCPG 212
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LSC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LSC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LSC)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  SERK1_ARATH | Q94AG2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SERK1_ARATH | Q94AG2: 4lsx 4z64 5iyx

(-) Related Entries Specified in the PDB File

3riz ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN IN ITS FREE FORM
3rj0 ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN BOUND TO BRASSINOLIDE
4lsa ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN MUTANT BOUND TO BRASSINOLIDE
4lsx STEROID RECEPTOR LIGAND BINDING DOMAIN BOUND TO SERK1 CO- RECEPTOR ECTODOMAIN