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(-) Description

Title :  CRYSTAL STRUCTURE OF MOZ DOUBLE PHD FINGER HISTONE H3K9AC COMPLEX
 
Authors :  I. Dreveny, S. E. Deeves, B. Yue, D. M. Heery
Date :  07 Jul 13  (Deposition) - 16 Oct 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Zinc Finger, Plant Homeodomain Finger, Double Phd Finger, Dpf, Histone Acetyltransferase, Histone H3 Tail Acetylated At K9, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Dreveny, S. E. Deeves, J. Fulton, B. Yue, M. Messmer, A. Bhattacharya, H. M. Collins, D. M. Heery
The Double Phd Finger Domain Of Moz/Myst3 Induces Alpha-Helical Structure Of The Histone H3 Tail To Facilitat Acetylation And Methylation Sampling And Modification.
Nucleic Acids Res. V. 42 822 2014
PubMed-ID: 24150941  |  Reference-DOI: 10.1093/NAR/GKT931

(-) Compounds

Molecule 1 - HISTONE ACETYLTRANSFERASE KAT6A
    ChainsA
    EC Number2.3.1.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainROSETTA 2
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 194-323
    GeneH3FA, HIST1H3A, KAT6A, MOZ, MYST3, RUNXBP2, ZNF220
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMOZ, YBF2/SAS3, SAS2 AND TIP60 PROTEIN 3, MYST-3, MONOCYTIC LEUKEMIA ZINC FINGER PROTEIN, RUNT-RELATED TRANSCRIPTION FACTOR- BINDING PROTEIN 2, ZINC FINGER PROTEIN 220
 
Molecule 2 - HISTONE H3.1
    ChainsB
    EngineeredYES
    FragmentUNP RESIDUES 2-22
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHISTONE H3/A, HISTONE H3/B, HISTONE H3/C, HISTONE H3/D, HISTONE H3/F, HISTONE H3/H, HISTONE H3/I, HISTONE H3/J HISTONE H3/K, HISTONE H3/L
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE
2ZN4Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:281 , CYS A:284 , CYS A:307 , CYS A:310BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWARECYS A:265 , CYS A:268 , HIS A:289 , CYS A:292BINDING SITE FOR RESIDUE ZN A 402
3AC3SOFTWARECYS A:209 , CYS A:212 , HIS A:238 , CYS A:241BINDING SITE FOR RESIDUE ZN A 403
4AC4SOFTWARECYS A:230 , CYS A:233 , CYS A:259 , CYS A:262BINDING SITE FOR RESIDUE ZN A 404
5AC5SOFTWAREPHE A:211 , CYS A:241 , LEU A:242 , LYS A:243 , ILE A:260 , GLU A:261 , LYS A:263 , GLN A:271 , ALA A:275 , ASP A:276 , MET A:278 , LEU A:279 , PHE A:280 , CYS A:281 , ASP A:282 , ASP A:285 , MET A:300 , GLY A:303 , HOH A:511 , HOH A:545 , HOH B:102 , HOH B:103 , HOH B:104 , HOH B:105 , HOH B:106 , HOH B:107 , HOH B:110BINDING SITE FOR CHAIN B OF HISTONE H3.1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LKA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:294 -Pro A:295

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LKA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LKA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LKA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......................................ee......eehhhhhh.hhhhhhhhhh...................hhh.eee......eee.hhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lka A 190 HMLELPHEKDKPVAEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRPRKK 315
                                   199       209       219       229       239       249       259       269       279       289       299       309      

Chain B from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .eehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4lka B   1 ARTKQTARkSTG  12
                                    10  
                                    9-ALY

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LKA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LKA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LKA)

(-) Gene Ontology  (53, 59)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:294 - Pro A:295   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H31_HUMAN | P684311cs9 1ct6 1guw 1o9s 1q3l 2b2t 2b2u 2b2v 2b2w 2c1j 2c1n 2cv5 2kwj 2kwk 2l75 2lbm 2m0o 2ndf 2ndg 2oq6 2ot7 2ox0 2ri7 2uxn 2v89 2vpg 2x0l 3a1b 3afa 3avr 3ayw 3aze 3azf 3azg 3azh 3azi 3azj 3azk 3azl 3azm 3azn 3b95 3kmt 3kqi 3lqi 3lqj 3o34 3o35 3o37 3qj6 3rig 3riy 3sou 3sow 3u31 3u3d 3u4s 3u5n 3u5o 3u5p 3uee 3uef 3uig 3uii 3uik 3v43 3w96 3w97 3w98 3w99 3wa9 3waa 3wkj 3x1s 3x1t 3x1u 3x1v 3zg6 3zvy 4a0j 4a0n 4a7j 4bd3 4c1q 4f4u 4f56 4ft2 4ft4 4fwf 4hon 4i51 4l7x 4lk9 4llb 4lxl 4n4h 4qbq 4qbr 4qbs 4tn7 4u68 4up0 4uy4 4x3k 4y6l 4yhp 4yhz 4ym5 4ym6 4z0r 4z2m 5av5 5av6 5av8 5av9 5avb 5avc 5b24 5b2i 5b2j 5b31 5c11 5c13 5c3i 5cpi 5cpj 5cpk 5d6y 5dah 5fb0 5fb1 5ffv 5gse 5gsu 5gt0 5gt3 5gtc 5hjb 5hjc 5hjd 5hyn 5iql 5j3v 5j9s 5jhn 5jin 5jiy 5jj0 5jrg 5kjh 5kji 5kkl 5m5g 5svx 5svy 5t0k 5t0m 5t1g 5t1i 5t8r 5tbn 5tdr 5tdw 5v21 5v22 5va6
        KAT6A_HUMAN | Q927941m36 2ln0 2ozu 2rc4 3v43 4ljn 4lk9 4llb 5b75 5b76 5b77 5b78

(-) Related Entries Specified in the PDB File

4ljn 4lk9 4llb