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(-) Description

Title :  CRYSTAL STRUCTURE OF AN APOPTOSIS-INDUCING FACTOR, MITOCHONDRION-ASSOCIATED, 1 (AIFM1) FROM HOMO SAPIENS AT 1.88 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
Date :  02 Jul 13  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A
Keywords :  Flavoprotein, Fad/Nad-Linked Reductases, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Oxidoreductase, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of An Apoptosis-Inducing Factor, Mitochondrion-Associated, 1 (Aifm1) From Homo Sapiens At 1. 88 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL
    ChainsA
    EC Number1.-.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidSPEEDET
    Expression System StrainPB1
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 100-611
    GeneAIF, AIFM1, BC111065, PDCD8
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROGRAMMED CELL DEATH PROTEIN 8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:138 , GLY A:139 , GLY A:140 , THR A:141 , ALA A:142 , VAL A:162 , GLU A:164 , ASP A:165 , ARG A:172 , PRO A:173 , SER A:176 , LYS A:177 , LYS A:232 , VAL A:233 , ALA A:259 , THR A:260 , GLY A:261 , ARG A:285 , LYS A:286 , GLY A:437 , ASP A:438 , GLU A:453 , HIS A:454 , HIS A:455 , ALA A:458 , PHE A:482 , TRP A:483 , HOH A:803 , HOH A:804 , HOH A:805 , HOH A:818 , HOH A:837 , HOH A:840 , HOH A:1002 , HOH A:1065BINDING SITE FOR RESIDUE FAD A 700
2AC2SOFTWARELEU A:168 , TYR A:211 , VAL A:212 , ALA A:226 , VAL A:227BINDING SITE FOR RESIDUE EDO A 701
3AC3SOFTWAREGLY A:309 , MSE A:340 , GLY A:341 , LYS A:342 , HOH A:807 , HOH A:867BINDING SITE FOR RESIDUE EDO A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LII)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LII)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LII)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LII)

(-) Exons   (0, 0)

(no "Exon" information available for 4LII)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:474
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeee..hhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh....hhhhhheee.....eee....hhhhh............eeeeee...eeeee....eeee....eeeeeeeee...eee..hhhhhh.hhhhhhheee..hhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh..eee....eeeeeee..eeeeee....eeee.eeee...eee...hhhhhh.........ee.....eee..eee....eeeee...eee...hhhhhhhhhhhhhhhh...........eeeee.....eeeeee.......eeeeee......hhhhhhhhhh..hhhhhh...............eeeeeeee..eeeeeeee....hhhhhhhhhhhh....hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lii A 125 QDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYmRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNmVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNmGKILPEYLSNWTmEKVRREGVKVmPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENmTGAAKPYWHQSmFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPDYGKGVIFYLRDKVVVGIVLWNIFNRmPIARKIIKDGEQHEDLNEVAKLFNIH 611
                                   134       144       154       164      |174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334     | 344       354       364       374       384       394       404       414       424       434       444       454       464    |  474      |484       494       504       514       524       534       544||     567       577       587       597       607    
                                                                        171-MSE                                                                242-MSE                                                                                           340-MSE      353-MSE    364-MSE                                                                                                  469-MSE     481-MSE                                                         545|                       585-MSE                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                               559                                                    

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LII)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LII)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LII)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AIFM1_HUMAN | O958311m6i 4bur 4bv6 4fdc 5fmh 5fs6 5fs7 5fs8 5fs9 5kvh 5kvi

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4LII)