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(-) Description

Title :  CRYSTAL STRUCTURE OF RUNX1 AND ETS1 BOUND TO TCR ALPHA PROMOTER (CRYSTAL FORM 2)
 
Authors :  T. H. Tahirov
Date :  01 Jun 13  (Deposition) - 26 Mar 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Runt Domain, Ets Domain, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Shrivastava, K. Mino, N. D. Babayeva, O. I. Baranovskaya, A. Rizzino, T. H. Tahirov
Structural Basis Of Ets1 Activation By Runx1.
Leukemia V. 28 2040 2014
PubMed-ID: 24646888  |  Reference-DOI: 10.1038/LEU.2014.111

(-) Compounds

Molecule 1 - RUNT-RELATED TRANSCRIPTION FACTOR 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 1-242
    GeneAML1, CBFA2, PEBP2AB, RUNX1
    Organism CommonMOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymRUNX1, ACUTE MYELOID LEUKEMIA 1 PROTEIN, CORE-BINDING FACTOR SUBUNIT ALPHA-2, CBF-ALPHA-2, ONCOGENE AML-1, POLYOMAVIRUS ENHANCER- BINDING PROTEIN 2 ALPHA B SUBUNIT, PEA2-ALPHA B, PEBP2-ALPHA B, SL3-3 ENHANCER FACTOR 1 ALPHA B SUBUNIT, SL3/AKV CORE-BINDING FACTOR ALPHA B SUBUNIT
 
Molecule 2 - PROTEIN C-ETS-1
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 296-441
    GeneETS1, EWSR2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymETS1, P54
 
Molecule 3 - 5'-D(*GP*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3'
    ChainsC
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTCR ALPHA DNA STRAND 1
    SyntheticYES
 
Molecule 4 - 5'-D(*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3'
    ChainsD
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsTCR ALPHA DNA STRAND 2
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4L0Z)

(-) Sites  (0, 0)

(no "Site" information available for 4L0Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L0Z)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:155 -Pro A:156

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L0Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L0Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4L0Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.....eeee....eee.........eeee........eee............ee..eee....eee....ee.........eeeeeee.....eeeeeeeeeeee...........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l0z A  54 VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRGSLSFSERLSELEQLRRTAMRVS 212
                                    63        73        83        93       103       113       123       133       143       153       163       173   ||  195       205       
                                                                                                                                                     177|                      
                                                                                                                                                      190                      

Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.........ee.....eee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eee......eeee..hhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 4l0z B 332 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAM 432
                                   341       351       361       371       381       391       401       411       421       431 

Chain C from PDB  Type:DNA  Length:16
                                                
                 4l0z C   1 GGAAGCCACATCCTCT  16
                                    10      

Chain D from PDB  Type:DNA  Length:16
                                                
                 4l0z D 101 CAGAGGATGTGGCTTC 116
                                   110      

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L0Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L0Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L0Z)

(-) Gene Ontology  (89, 104)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:155 - Pro A:156   [ RasMol ]  
 

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  ETS1_HUMAN | P14921
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  RUNX1_MOUSE | Q03347
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  ETS1_HUMAN | P14921
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ETS1_HUMAN | P149211gvj 2nny 2stt 2stw 3mfk 3ri4 3wts 3wtt 3wtu 3wtv 3wtw 3wtx 3wty 3wtz 3wu0 3wu1 4l0y 4l18 4lg0
        RUNX1_MOUSE | Q033471ean 1eao 1eaq 1hjb 1hjc 1io4 2j6w 3wts 3wtt 3wtu 3wtv 3wtw 3wtx 3wty 3wu1 4l0y 4l18

(-) Related Entries Specified in the PDB File

4l0y 4l18