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(-) Description

Title :  THE MUTANT STRUCTURE OF THE HUMAN GLYCYL-TRNA SYNTHETASE E71G
 
Authors :  X. Qin, Z. Hao, Q. Tian, Z. Zhang, C. Zhou, W. Xie
Date :  15 May 13  (Deposition) - 21 May 14  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.74
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Rossmann Fold, Aminoacylation, Trna-Gly, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Deng, X. Qin, L. Chen, Q. Jia, Y. Zhang, Z. Zhang, D. Lei, G. Ren, Z. Zhou, Z. Wang, Q. Li, W. Xie
Large Conformational Changes Of Insertion 3 In Human Glycyl-Trna Synthetase (Hglyrs) During Catalysis
J. Biol. Chem. V. 291 5740 2016
PubMed-ID: 26797133  |  Reference-DOI: 10.1074/JBC.M115.679126

(-) Compounds

Molecule 1 - GLYCINE--TRNA LIGASE
    ChainsA
    EC Number6.1.1.14
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21B(+)
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 55-739
    GeneGARS
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGLYCYL-TRNA SYNTHETASE, DIADENOSINE TETRAPHOSPHATE SYNTHETASE, AP-4-A SYNTHETASE, GLYRS

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:621 , PRO A:627 , THR A:629BINDING SITE FOR RESIDUE GOL A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KQE)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:265 -Pro A:266
2Thr A:626 -Pro A:627

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KQE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KQE)

(-) Exons   (0, 0)

(no "Exon" information available for 4KQE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:597
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..eee.hhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhh.ee.....eeehhhhhhhhhhhhheeeeee......eeehhhhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhhhhh..............eeee...eee.......eeee...hhhhhhhhhhhhhhhh.....eeeeeeeeee.......hhhhh..eeeeeeeeeeehhhhh...hhhhh...eeeeehhhhhhh....eeeehhhhhhh....hhhhhhhhhhhhhhhhhh..hhh.eeeee......eeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhh....eee.........hhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhh....eeee..eeee..............eee..eeeeeeeehhhhhhhhhhhheee.......eee..........eeeee......hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeeehhhhhhh...eeeeee.....eeeee..hhhhhhhhhhh...hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kqe A  64 IVDRAKMGDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENECDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEG 674
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       388       398       408       418       428      |444       454       464       474       484       494       504    || 517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       
                                                                                                                                                                                                                                                                                                                                                        382|                                            435|                                                                509|                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                         388                                             442                                                                 513                                                                                                                                                                 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KQE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KQE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KQE)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GARS_HUMAN | P412502pme 2pmf 2q5h 2q5i 2zt5 2zt6 2zt7 2zt8 2zxf 4kr2 4kr3 4qei 5e6m

(-) Related Entries Specified in the PDB File

4kr2 4kr3