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(-) Description

Title :  COMPLEX OF CDC42 WITH THE CRIB-PR DOMAIN OF IRSP53
 
Authors :  D. J. Kast, R. Dominguez
Date :  22 Mar 13  (Deposition) - 05 Mar 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gtpase Binding Domain, Crib Domain, Cytoskeleton Regulation, Signaling Protein-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. J. Kast, C. Yang, A. Disanza, M. Boczkowska, Y. Madasu, G. Scita, T. Svitkina, R. Dominguez
Mechanism Of Irsp53 Inhibition And Combinatorial Activation By Cdc42 And Downstream Effectors.
Nat. Struct. Mol. Biol. V. 21 413 2014
PubMed-ID: 24584464  |  Reference-DOI: 10.1038/NSMB.2781

(-) Compounds

Molecule 1 - CELL DIVISION CONTROL PROTEIN 42 HOMOLOG
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTYB11
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneCDC42
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymG25K GTP-BINDING PROTEIN
 
Molecule 2 - BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2
    ChainsB
    EngineeredYES
    FragmentCRIB-PR DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBAI-ASSOCIATED PROTEIN 2, BAI1-ASSOCIATED PROTEIN 2, PROTEIN BAP2, FAS LIGAND-ASSOCIATED FACTOR 3, FLAF3, INSULIN RECEPTOR SUBSTRATE P53/P58, IRS-58, IRSP53/58, INSULIN RECEPTOR SUBSTRATE PROTEIN OF 53 KDA, IRSP53, INSULIN RECEPTOR SUBSTRATE P53
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1GNP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
3PE43Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , GLN A:116 , ASP A:118 , LEU A:119 , LYS A:128 , SER A:158 , ALA A:159 , LEU A:160 , MG A:202 , HOH A:302 , HOH A:304 , HOH A:309 , HOH A:333 , HOH A:338 , HOH A:355 , HOH A:364 , HOH A:373BINDING SITE FOR RESIDUE GNP A 201
2AC2SOFTWARETHR A:17 , THR A:35 , GNP A:201 , HOH A:302 , HOH A:304BINDING SITE FOR RESIDUE MG A 202
3AC3SOFTWAREHOH A:341 , HOH A:346 , HOH A:372 , HOH A:384 , HOH A:385 , HOH A:414BINDING SITE FOR RESIDUE MG A 203
4AC4SOFTWAREVAL A:85 , LYS A:128 , HOH A:364 , HOH A:375BINDING SITE FOR RESIDUE PE4 A 204
5AC5SOFTWAREPHE A:90 , GLU A:91 , LYS A:94 , ASP A:148 , HOH A:371 , HOH A:381 , HOH A:382BINDING SITE FOR RESIDUE PE4 A 205
6AC6SOFTWARETHR A:24 , ASN A:26 , PRO B:270 , PRO B:272BINDING SITE FOR RESIDUE PE4 A 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JS0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly B:288 -Arg B:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JS0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JS0)

(-) Exons   (0, 0)

(no "Exon" information available for 4JS0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4js0 A   1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        

Chain B from PDB  Type:PROTEIN  Length:29
                                                             
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                 4js0 B 263 SNLVISDPIPGAKPLPVPPELAPFVGRMS 291
                                   272       282         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JS0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JS0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JS0)

(-) Gene Ontology  (130, 146)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly B:288 - Arg B:289   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAIP2_HUMAN | Q9UQB81wdz 1y2o 2ykt 3rnj
        CDC42_HUMAN | P609531a4r 1aje 1am4 1an0 1cee 1cf4 1doa 1e0a 1ees 1grn 1gzs 1ki1 1kz7 1kzg 1nf3 2ase 2dfk 2kb0 2ngr 2odb 2qrz 2wm9 2wmn 2wmo 3gcg 3qbv 3vhl 4did 4itr 4yc7 4ydh 5cjp 5fi1 5hzk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4JS0)