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(-) Description

Title :  STRUCTURE OF RSK2 T493M CTD MUTANT BOUND TO 2-CYANO-N-(1-HYDROXY-2-METHYLPROPAN-2-YL)-3-(3-(3,4,5-TRIMETHOXYPHENYL)-1H-INDAZOL-5-YL) ACRYLAMIDE
 
Authors :  R. M. Miller, V. O. Paavilainen, S. Krishnan, I. M. Serafimova, J. Taunt
Date :  28 Feb 13  (Deposition) - 10 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Phosphorylation, Covalent Inhibitor, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. M. Miller, V. O. Paavilainen, S. Krishnan, I. M. Serafimova, J. Taunton
Electrophilic Fragment-Based Design Of Reversible Covalent Kinase Inhibitors.
J. Am. Chem. Soc. V. 135 5298 2013
PubMed-ID: 23540679  |  Reference-DOI: 10.1021/JA401221B

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S6 KINASE ALPHA-3
    ChainsA
    EC Number2.7.11.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneRPS6KA3, ISPK1, MAPKAPK1B, RSK2
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymS6K-ALPHA-3, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 3, P90-RSK 3, P90RSK3, INSULIN-STIMULATED PROTEIN KINASE 1, ISPK-1, MAP KINASE- ACTIVATED PROTEIN KINASE 1B, MAPK-ACTIVATED PROTEIN KINASE 1B, MAPKAP KINASE 1B, MAPKAPK-1B, RIBOSOMAL S6 KINASE 2, RSK-2, PP90RSK2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11LE1Ligand/Ion(2S)-2-CYANO-N-(1-HYDROXY-2-METHYLPROPAN-2-YL)-3-[3-(3,4,5-TRIMETHOXYPHENYL)-1H-INDAZOL-5-YL]PROPANAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:428 , GLY A:429 , SER A:434 , CYS A:436 , ALA A:449 , LYS A:451 , MET A:493 , GLU A:494 , LEU A:495 , MET A:496 , LEU A:546 , ASP A:561 , HOH A:907BINDING SITE FOR RESIDUE 1LE A 801

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:579 -A:579

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JG8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JG8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JG8)

(-) Exons   (0, 0)

(no "Exon" information available for 4JG8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeeeeeee...eeeeeeee.....eeeeeeee.....hhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....hhh.eee......ee..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh............hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jg8 A 415 SIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVMELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAATYSALNRNQ 714
                                   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JG8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JG8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JG8)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6A3_HUMAN | P518124d9t 4d9u 4jg6 4jg7 4nus 4nw5 4nw6 5d9k 5d9l

(-) Related Entries Specified in the PDB File

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