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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SECOND SH3 DOMAIN OF ITSN2 BOUND WITH A SYNTHETIC PEPTIDE
 
Authors :  A. Dong, X. Guan, H. Huang, J. Gu, W. Tempel, S. Sidhu, C. Bountra, C. H. Ar A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Date :  20 Dec 12  (Deposition) - 25 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Sh3 Domain, Itsn2, Synthetic Peptide, Protein-Peptide Complex, Endocytosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Guan, A. Dong, H. Huang, J. Gu, W. Tempel, S. Sidhu, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong
Crystal Structure Of The Second Sh3 Domain Of Itsn2 Bound With A Synthetic Peptide
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTERSECTIN-2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHH0239
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 901-955
    Gene: ITSN2, KIAA1256, SH3D1B, SWAP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SH3 DOMAIN-CONTAINING PROTEIN 1B, SH3P18, SH3P18-LIKE WASP- ASSOCIATED PROTEIN
 
Molecule 2 - SYNTHETIC PEPTIDE
    Chains: C
    Engineered: YES
    Other Details: SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric/Biological Unit (4, 18)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CL1Ligand/IonCHLORIDE ION
3SO41Ligand/IonSULFATE ION
4UNX15Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:909 , THR A:910 , ALA A:911 , HOH A:1169BINDING SITE FOR RESIDUE CL A 1001
2AC2SOFTWARELYS A:921 , HIS A:922 , HOH A:1116 , HOH A:1129 , HOH A:1154 , HIS B:922BINDING SITE FOR RESIDUE SO4 A 1002

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1B:907 -A:907

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IIO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IIO)

(-) Exons   (0, 0)

(no "Exon" information available for 4IIO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
                                                                                               
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee..................eeeeeeee..eeeeee..eeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 4iio A 894 GMAQGALLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIPA 956
                                   903       913       923       933       943       953   


Chain B from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..................eeeeeeee..eeeeee..eeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4iio B 899 ALLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIP 955
                                   908       918       928       938       948       


Chain C from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ....hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4iio C   1 xWRGSLSYLKGPL  13
                            |       10   
                            1-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IIO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IIO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IIO)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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        ITSN2_HUMAN | Q9NZM3: 1j3t 1udl 1ue9 1uff 1uhf 3gf9 3jzy

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