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(-) Description

Title :  CRYSTAL STRUCTURE OF NIK WITH 11-BROMO-5,6,7,8-TETRAHYDROPYRIMIDO[4', 5':3,4]CYCLOHEPTA[1,2-B]INDOL-2-AMINE (T28)
 
Authors :  J. Liu, A. Sudom, Z. Wang
Date :  13 Dec 12  (Deposition) - 17 Apr 13  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nik, Nuclear Factor (Nf)-Kb, P100 Processing, 2-Aminopyrimidine, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Li, L. R. Mcgee, B. Fisher, A. Sudom, J. Liu, S. M. Rubenstein, M. K. Anwer, T. D. Cushing, Y. Shin, M. Ayres, F. Lee, J. Eksterowicz, P. Faulder, B. Waszkowycz, O. Plotnikova, E. Farrelly, S. H. Xiao, G. Chen, Z. Wang
Inhibiting Nf-Kb-Inducing Kinase (Nik): Discovery, Structure-Based Design, Synthesis, Structure Activity Relationship, And Co-Crystal Structures
Bioorg. Med. Chem. Lett. V. 23 1238 2013
PubMed-ID: 23374866  |  Reference-DOI: 10.1016/J.BMCL.2013.01.012

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14
    ChainsA, B
    EC Number2.7.11.25
    EngineeredYES
    FragmentUNP RESIDUES 330-680
    GeneMAP3K14, NIK
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNF-KAPPA-BETA-INDUCING KINASE, HSNIK, SERINE/THREONINE- PROTEIN KINASE NIK

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1T282Ligand/Ion11-BROMO-5,6,7,8-TETRAHYDROPYRIMIDO[4',5':3,4]CYCLOHEPTA[1,2-B]INDOL-2-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:406 , VAL A:414 , ALA A:427 , MET A:469 , GLU A:470 , LEU A:472 , SER A:476 , GLN A:479 , LEU A:522 , CYS A:533 , HOH A:830 , HOH A:852BINDING SITE FOR RESIDUE T28 A 701
2AC2SOFTWARELEU B:406 , GLY B:409 , VAL B:414 , ALA B:427 , MET B:469 , GLU B:470 , LEU B:472 , SER B:476 , LEU B:522 , ASP B:534 , HOH B:856BINDING SITE FOR RESIDUE T28 B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IDT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:602 -Pro A:603
2Gly B:602 -Pro B:603

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IDT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IDT)

(-) Exons   (0, 0)

(no "Exon" information available for 4IDT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:334
                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eee.hhhhhhhhhhhhhhhh............eeeee.................eeeeeeeeee...eeeeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee.........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhh.hhhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4idt A 333 VEEYLVHALQGSVSSGQAHSLTSLAKTWAARGSRSREPSPKTEDNEGVLLTEKLKPVDYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRAEELMACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCHPWTQFFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVGGLKSPWRGEYKEPRHP 675
                                   342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542|      561       571       581       591       601       611       621       631       641       651       661       671    
                                                                                                                                                                                                                                           542|                                                                                                                           
                                                                                                                                                                                                                                            552                                                                                                                           

Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..eee.hhhhhhhhhhhhhhhh............eeeee.................eeeeeeeeee...eeeeeeee.....eeeeeeee.hhhhhhhhhh...........eeeeeee..eeeeee......hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..ee....hhh.eee......eee......ee.........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhhhhh..hhhhh....hhhhhhhhhhhh........hhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4idt B 334 EEYLVHALQGSVSSGQAHSLTSLAKTWAARGSRSREPSPKTEDNEGVLLTEKLKPVDYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRAEELMACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKEQGCLPEDRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCHPWTQFFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQVGGLKSPWRGEYKEPRHPPP 677
                                   343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       552       562       572       582       592       602       612       622       632       642       652       662       672     
                                                                                                                                                                                                                                          542|                                                                                                                             
                                                                                                                                                                                                                                           552                                                                                                                             

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IDT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IDT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IDT)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        M3K14_HUMAN | Q995584dn5 4g3d 4idv

(-) Related Entries Specified in the PDB File

4idv