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(-) Description

Title :  N-TERMINAL C2 DOMAIN OF HUMAN CEP120
 
Authors :  R. Janowski, N. Guarin, M. Coll
Date :  11 Dec 12  (Deposition) - 18 Jun 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  C2 Domain, Lipid Binding, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Janowski, N. Guarin, S. Speroni, L. Serrano, M. Coll
N-Terminal C2 Domain Tandem Of Human Cep120 Shows Lipid Binding Properties
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CENTROSOMAL PROTEIN OF 120 KDA
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: POPINF
    Fragment: C2 DOMAIN, UNP RESIDUES 1-151
    Gene: CEP120, CCDC100
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CEP120, COILED-COIL DOMAIN-CONTAINING PROTEIN 100

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MSE1Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4ICX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ICX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ICX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ICX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ICX)

(-) Exons   (0, 0)

(no "Exon" information available for 4ICX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh.eeeeeeeeeeee........eeeeeeee..eeee...ee.....eeeeeeeeeeehhhhhhhhhhh..eeeeeeee......eeeeeeeee............eeee...........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4icx A   3 SKSDQLLIVVSILEGRHFPKRPKHmLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQETKQAPKWYQLLSNKYTKFKSEIQISIALETD 135
                                    12        22    |   32        42        52        62        72        82        92       102       112       122       132   
                                                   27-MSE                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee........eeeeeeee..eeee...ee.....eeeeeeeeeehhhhhhhhhhh..eeeeeeeee......eeeeeeeeee.hhh.......eeee...........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4icx B   6 DQLLIVVSILEGRHFPKRPKHmLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQETKQAPKWYQLLSNKYTKFKSEIQISIALETD 135
                                    15        25 |      35        45        55        65        75        85        95       105       115       125       135
                                                27-MSE                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee....eeeeeeeeeeee..eeee...eee....eeeeeeeeeeehhhhhhhhhhh.eeeeeeeee......eeeeeeeeee...........eeee...........eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4icx C   6 DQLLIVVSILEGRHFPKRPKHmLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQETKQAPKWYQLLSNKYTKFKSEIQISIALETDT 136
                                    15        25 |      35        45        55        65        75        85        95       105       115       125       135 
                                                27-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ICX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ICX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ICX)

(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CE120_HUMAN | Q8N960: 4icw

(-) Related Entries Specified in the PDB File

4icw N-TERMINAL C2 DOMAIN OF HUMAN CEP120