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(-) Description

Title :  CRYSTAL STRUCTURE OF CXCL4L1
 
Authors :  J. H. Kuo, J. S. Liu, W. G. Wu, S. C. Sue
Date :  30 Oct 12  (Deposition) - 10 Apr 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Anti-Angiogenesis, Heparin, Extracellular, Antitumor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. H. Kuo, Y. P. Chen, J. S. Liu, A. Dubrac, C. Quemener, H. Prats, A. Bikfalvi, W. G. Wu, S. C. Sue
Alternative C-Terminal Helix Orientation Alters Chemokine Function: Structure Of The Anti-Angiogenic Chemokine, Cxcl4L1
J. Biol. Chem. V. 288 13522 2013
PubMed-ID: 23536183  |  Reference-DOI: 10.1074/JBC.M113.455329

(-) Compounds

Molecule 1 - PLATELET FACTOR 4 VARIANT
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GenePF4V1, CXCL4V1, SCYB4V1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC-X-C MOTIF CHEMOKINE 4 VARIANT, CXCL4L1, PF4ALT, PF4VAR1, PLATELET FACTOR 4 VARIANT(5-74)

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HSV)

(-) Sites  (0, 0)

(no "Site" information available for 4HSV)

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:10 -A:36
2A:12 -A:52
3B:10 -B:36
4B:12 -B:52
5C:10 -C:36
6C:12 -C:52
7D:10 -D:36
8D:12 -D:52

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HSV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HSV)

(-) Exons   (0, 0)

(no "Exon" information available for 4HSV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:65
                                                                                                
               SCOP domains d4hsva_ A: automated matches                                      SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeeee.........eeeeee....eeeehhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  4hsv A  6 GDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 70
                                    15        25        35        45        55        65     

Chain B from PDB  Type:PROTEIN  Length:59
                                                                                          
               SCOP domains d4hsvb_ B: automated matches                                SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhh.eeeeeee.........eeeeee....eee.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  4hsv B 10 CLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHL 68
                                    19        29        39        49        59         

Chain C from PDB  Type:PROTEIN  Length:59
                                                                                          
               SCOP domains d4hsvc_ C: automated matches                                SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhh.eeeeeee.........eeeeee....eee.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  4hsv C  9 QCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEH 67
                                    18        28        38        48        58         

Chain D from PDB  Type:PROTEIN  Length:65
                                                                                                
               SCOP domains d4hsvd_ D: automated matches                                      SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhh.eeeeeee.........eeeeee....eeeehhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                  4hsv D  6 GDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 70
                                    15        25        35        45        55        65     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HSV)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1f9q