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(-) Description

Title :  TARGETING THE BINDING FUNCTION 3 (BF3) SITE OF THE HUMAN ANDROGEN RECEPTOR THROUGH VIRTUAL SCREENING. 2. DEVELOPMENT OF 2-((2-PHENOXYETHYL) THIO)-1H-BENZOIMIDAZOLE DERIVATIVES.
 
Authors :  S. N. M. Ravi, E. Leblanc, P. Axerio-Cilies, C. Labriere, K. Frewin, M. D. H. Hassona, N. A. Lack, F. Q. Han, E. S. Guns, R. Young, F. Ban, P. S. R A. Cherkasov
Date :  17 Oct 12  (Deposition) - 23 Jan 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Nuclear Hormone Receptor, Androgen Binding Domain, Transcriptional Factor, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. S. Munuganti, E. Leblanc, P. Axerio-Cilies, C. Labriere, K. Frewin K. Singh, M. D. Hassona, N. A. Lack, H. Li, F. Ban, E. Tomlinson Guns, R. Young, P. S. Rennie, A. Cherkasov
Targeting The Binding Function 3 (Bf3) Site Of The Androgen Receptor Through Virtual Screening. 2. Development Of 2-((2-Phenoxyethyl) Thio)-1H-Benzimidazole Derivatives.
J. Med. Chem. V. 56 1136 2013
PubMed-ID: 23301637  |  Reference-DOI: 10.1021/JM3015712

(-) Compounds

Molecule 1 - ANDROGEN RECEPTOR
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 664-919
    GeneAR, DHTR, NR3C4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDIHYDROTESTOSTERONE RECEPTOR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
117W1Ligand/Ion2-[(2-PHENOXYETHYL)SULFANYL]-1H-BENZIMIDAZOLE
2GOL1Ligand/IonGLYCEROL
3SO41Ligand/IonSULFATE ION
4TES1Ligand/IonTESTOSTERONE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:704 , ASN A:705 , GLN A:711 , ARG A:752 , THR A:877BINDING SITE FOR RESIDUE TES A 1001
2AC2SOFTWAREPHE A:673 , PRO A:723 , ASN A:727 , LEU A:830 , GLU A:837 , ARG A:840 , ILE A:882BINDING SITE FOR RESIDUE 17W A 1002
3AC3SOFTWAREPRO A:682 , GLN A:711 , VAL A:715 , LYS A:808BINDING SITE FOR RESIDUE GOL A 1003
4AC4SOFTWARESER A:696 , PHE A:697 , LYS A:777 , ARG A:779 , SER A:853BINDING SITE FOR RESIDUE SO4 A 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HLW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HLW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HLW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HLW)

(-) Exons   (0, 0)

(no "Exon" information available for 4HLW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains d4hlwa_ A: Androgen receptor                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..eeehhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..eee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hlw A 670 QPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIATSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQVPKILSGKVKPIYFHTQ 919
                                   679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839   ||  855       865       875       885       895       905       915    
                                                                                                                                                                                                       843|                                                                     
                                                                                                                                                                                                        850                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HLW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HLW)

(-) Gene Ontology  (55, 55)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANDR_HUMAN | P102751e3g 1gs4 1t5z 1t63 1t65 1xj7 1xow 1xq3 1z95 2am9 2ama 2amb 2ao6 2ax6 2ax7 2ax8 2ax9 2axa 2hvc 2oz7 2pio 2pip 2piq 2pir 2pit 2piu 2piv 2piw 2pix 2pkl 2pnu 2q7i 2q7j 2q7k 2q7l 2yhd 2ylo 2ylp 2ylq 2z4j 3b5r 3b65 3b66 3b67 3b68 3btr 3l3x 3l3z 3rlj 3rll 3v49 3v4a 3zqt 4k7a 4oea 4oed 4oey 4oez 4ofr 4ofu 4ogh 4oh5 4oh6 4oha 4oil 4oiu 4oj9 4ojb 4ok1 4okb 4okt 4okw 4okx 4olm 4ql8 5cj6 5jjm 5t8e 5t8j 5v8q

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HLW)