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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ID HR4748B.
 
Authors :  J. Seetharaman, M. Su, C Ciccosanti, S Sahdev, T. B. Acton, R Xiao, J. Everett, G. T Montelione, J. F. Hunt, L Tong, Northeast Structural Consortium (Nesg)
Date :  05 Oct 12  (Deposition) - 12 Dec 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Structural Genomics, Psi-Biology, Northeast Structural Genomics Consortium, Nesg, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Seetharaman, M. Su, C Ciccosanti, S Sahdev, T. B. Acton, R Xiao, J. K Everett, G. T Montelione, J. F. Hunt, L Tong
Crystal Structure Of A Transcription Elongation Factor B Polypeptide 3 From Homo Sapiens, Northeast Structural Genomics Consortium Target Id Hr4748B. (Casp Target)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3
    ChainsA, B, C, D
    FragmentF-BOX DOMAIN RESIDUES 597-682
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymELONGIN 110 KDA SUBUNIT, ELONGIN-A, ELOA, RNA POLYMERASE II TRANSCRIPTION FACTOR SIII SUBUNIT A1, SIII P110

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
2SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:71 , ARG B:74 , ARG C:17 , HOH D:208BINDING SITE FOR RESIDUE SO4 B 101
2AC2SOFTWAREARG A:17 , ARG B:17 , ARG C:71 , ARG C:74BINDING SITE FOR RESIDUE SO4 C 101
3AC3SOFTWAREARG A:17 , HOH A:102 , ARG B:17 , ARG D:71 , ARG D:74BINDING SITE FOR RESIDUE SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HFX)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys A:50 -Glu A:51
2Tyr B:8 -Ser B:9
3Ser D:59 -Trp D:60

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HFX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HFX)

(-) Exons   (0, 0)

(no "Exon" information available for 4HFX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:59
                                                                                          
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  4hfx A 13 PVLERCTPDQLYRIEEYETDQLWKVHCKEERPEEYESWREmYLRLQDAREQRLRVLTKN 81
                                    22      ||38      ||52        62|       72         
                                           29|       45|           63-MSE              
                                            36        50                               

Chain B from PDB  Type:PROTEIN  Length:63
                                                                                              
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  4hfx B  8 YSVLEPVLERCTPDQLYRIEEYNHVLIQLWKVHCHRDFKESWREmYLRLQDAREQRLRVLTKN 81
                                    17        27      ||41        58    |   68        78   
                                                     34|         50|    |                  
                                                      39          58    |                  
                                                                       63-MSE              

Chain C from PDB  Type:PROTEIN  Length:48
                                                                               
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                  4hfx C  8 YSVLEPVLERCTPDQLYRIEIEETDSWREmYLRLQDAREQRLRVLTKN 81
                                    17        27|   ||  63        73        
                                              27|  38|   |                  
                                               34   59   |                  
                                                        63-MSE              

Chain D from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..hhhhhhhhhhhh............hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  4hfx D  7 PYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQSWREmYLRLQDAREQRLRVL 78
                                    16        26        36  ||   |65        75   
                                                           39|   |               
                                                            59   |               
                                                                63-MSE           

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HFX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HFX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HFX)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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