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(-) Description

Title :  CID OF HUMAN RPRD1B
 
Authors :  Z. Ni, C. Xu, W. Tempel, M. El Bakkouri, P. Loppnau, X. Guo, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, J. F. Greenblatt, Structural Consortium (Sgc)
Date :  05 Oct 12  (Deposition) - 17 Oct 12  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics Consortium, Sgc, Transcription, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Ni, C. Xu, W. Tempel, M. El Bakkouri, P. Loppnau, X. Guo, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, J. F. Greenblatt
Cid Of Human Rprd1B
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 1B
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15 MHL
    Expression System StrainBL21
    Expression System Taxid511693
    GeneRPRD1B, C20ORF77, CREPT
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCELL CYCLE-RELATED AND EXPRESSION-ELEVATED PROTEIN IN TUMOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
2UNX10Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:32 , ARG A:34 , LYS A:73 , HOH A:334 , ARG B:106 , HOH B:334BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREARG A:72 , LYS A:73 , ARG B:106 , ASN B:109 , HOH B:343BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWAREARG A:106 , ASN A:109 , ARG B:72 , LYS B:73BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREARG A:106 , HIS B:32 , ARG B:34 , LYS B:73BINDING SITE FOR RESIDUE SO4 B 201
5AC5SOFTWARESER A:17 , SER A:22 , VAL A:23 , SER B:17 , SER B:22 , VAL B:23 , HOH B:301 , HOH B:308 , HOH B:309 , HOH B:335BINDING SITE FOR RESIDUE SO4 B 202
6AC6SOFTWARELYS A:12 , ASN B:54BINDING SITE FOR RESIDUE SO4 B 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HFG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HFG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HFG)

(-) Exons   (0, 0)

(no "Exon" information available for 4HFG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfg A   3 SFSESALEKKLSELSNSQHSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMED 131
                                    12        22        32        42        52        62        72        82        92       102       112       122         

Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hfg B   3 SFSESALEKKLSELSNSQHSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSME 130
                                    12        22        32        42        52        62        72        82        92       102       112       122        

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HFG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HFG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HFG)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPR1B_HUMAN | Q9NQG54fla 4fu3 4nad 4q94 4q96

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4HFG)