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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRUNCATED SOLUBLE FORM OF HUMAN CD73 WITH ECTO-5'-NUCLEOTIDASE ACTIVITY
 
Authors :  D. P. Heuts, M. J. Weissenborn, R. V. Olkhov, A. M. Shaw, C. W. Levy, N. S. S
Date :  11 Sep 12  (Deposition) - 03 Oct 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  5'-Nucleotidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. P. Heuts, M. J. Weissenborn, R. V. Olkhov, A. M. Shaw, J. Gummadova, C. Levy, N. S. Scrutton
Crystal Structure Of A Soluble Form Of Human Cd73 With Ecto-5'-Nucleotidase Activity.
Chembiochem V. 13 2384 2012
PubMed-ID: 22997138  |  Reference-DOI: 10.1002/CBIC.201200426

(-) Compounds

Molecule 1 - 5'-NUCLEOTIDASE
    ChainsA, B
    EC Number3.1.3.5
    FragmentUNP RESIDUES 27-549
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym5'-NT, ECTO-5'-NUCLEOTIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO42Ligand/IonPHOSPHATE ION
3ZN4Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:147 , GLY A:148 , PRO A:254 , ASN A:311 , SER A:312 , SER A:313BINDING SITE FOR RESIDUE NAG A 601
2AC2SOFTWAREASP A:85 , ASN A:117 , HIS A:220 , HIS A:243 , ZN A:603 , PO4 A:604 , HOH A:1000BINDING SITE FOR RESIDUE ZN A 602
3AC3SOFTWAREASP A:36 , HIS A:38 , ASP A:85 , ZN A:602 , PO4 A:604 , HOH A:973 , HOH A:1000BINDING SITE FOR RESIDUE ZN A 603
4AC4SOFTWAREHIS A:38 , ASP A:85 , ASN A:117 , HIS A:118 , HIS A:243 , ARG A:354 , ARG A:395 , ZN A:602 , ZN A:603 , HOH A:778 , HOH A:788 , HOH A:973 , HOH A:1000BINDING SITE FOR RESIDUE PO4 A 604
5AC5SOFTWAREPRO B:254 , ASN B:311 , SER B:312 , SER B:313 , HOH B:952BINDING SITE FOR RESIDUE NAG B 601
6AC6SOFTWAREASP B:85 , ASN B:117 , HIS B:220 , HIS B:243 , ZN B:603 , PO4 B:604 , HOH B:969BINDING SITE FOR RESIDUE ZN B 602
7AC7SOFTWAREASP B:36 , HIS B:38 , ASP B:85 , ZN B:602 , PO4 B:604 , HOH B:969 , HOH B:970BINDING SITE FOR RESIDUE ZN B 603
8AC8SOFTWAREHIS B:38 , ASP B:85 , ASN B:117 , HIS B:118 , HIS B:243 , ARG B:354 , ARG B:395 , ZN B:602 , ZN B:603 , HOH B:758 , HOH B:894 , HOH B:969BINDING SITE FOR RESIDUE PO4 B 604

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:51 -A:57
2A:353 -A:358
3A:365 -A:387
4A:476 -A:479
5B:51 -B:57
6B:353 -B:358
7B:365 -B:387
8B:476 -B:479

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:263 -Pro A:264
2Glu B:129 -Pro B:130
3Tyr B:263 -Pro B:264
4Ser B:335 -Thr B:336

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H1S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H1S)

(-) Exons   (0, 0)

(no "Exon" information available for 4H1S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:521
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........................hhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhhhhhh...eee.hhhhhh..hhhhhh.........ee...eee..hhhhhhh.....eeeeee..eeeeeeeee..hhhhhh.....eee.hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhh....eee........................eeee.....eeeee.......eeeeeeeee.....eeeeee..ee.......hhhhhhhhhhhhhhhh...eeeee......hhhhhh...hhhhhhhhhhhhhhhhh...hhhhh...eeeee.hhh..........eeehhhhhhhh.....eeeeeeehhhhhhhhhhhhh.........eeee.eeeee.........eeeeeee........eee.....eeeeeeehhhhhhhhhhhhhhhhh.eee...hhhhhhhhhhhhhhee.......eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h1s A  27 WELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDNYQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHTDEMFWNHVSMCILNGGGIRSPIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS 549
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548 
                                                                                                                                                                                                                                                                                                                                             334|                                                                                                                                                                                                                    
                                                                                                                                                                                                                                                                                                                                              337                                                                                                                                                                                                                    

Chain B from PDB  Type:PROTEIN  Length:518
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..................hhhhh..hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhh..eee.hhhhhh..hhhhhh.........ee...eee..hhhhhhh.....eeeeee..eeeeeeeee..hhhhhh.....eee.hhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhh....eee........................eeee.....eeeee.......eeeeeeeee.....eeeeee..ee.......hhhhhhhhhhhhhhhh...eeeee......hhhhhh...hhhhhhhhhhhhhhhhhh.......eeeee.hhh..........eeehhhhhhhh....eeeeeeeehhhhhhhhhhhh..........eeee.eeeee.........eeeeeee........eee.....eeeeeeehhhhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhee.......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h1s B  27 WELTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHMFWNHVSMCILNGGGIRSPIDERNNGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGGDGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS 549
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326     ||338       348       358       368      |381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
                                                                                                                                                                                                                                                                                                                                           332|                                     375|                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                            335                                      379                                                                                                                                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H1S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H1S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H1S)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        5NTD_HUMAN | P215894h1y 4h2b 4h2f 4h2g 4h2i

(-) Related Entries Specified in the PDB File

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