4GXY - JenaLib

Title :   RNA STRUCTURE

Authors :   A. Serganov, A. Peselis

Date :   04 Sep 12 (Deposition) - 17 Oct 12 (Release) - 21 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.05

Chains :   Asym./Biol. Unit : A

Keywords :   Rna, Riboswitch, Adenosylcobalamin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Peselis, A. Serganov
Structural Insights Into Ligand Binding And Gene Expression Control By An Adenosylcobalamin Riboswitch.
Nat. Struct. Mol. Biol. V. 19 1182 2012
PubMed-ID: 23064646 | Reference-DOI: 10.1038/NSMB.2405

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G A:41 , G A:42 , A A:43 , G A:64 , G A:65 , U A:66 , C A:72 , A A:73 , U A:108 , G A:109 , G A:156 , A A:157 , A A:159 , C A:161	BINDING SITE FOR RESIDUE B1Z A 301
02	AC2	SOFTWARE	G A:78 , G A:148 , G A:149 , A A:150	BINDING SITE FOR RESIDUE B1Z A 302
03	AC3	SOFTWARE	G A:33 , U A:34 , U A:35 , A A:38 , A A:39	BINDING SITE FOR RESIDUE IRI A 303
04	AC4	SOFTWARE	G A:64 , G A:65 , C A:67 , C A:104 , C A:105	BINDING SITE FOR RESIDUE IRI A 304
05	AC5	SOFTWARE	U A:50 , G A:51 , A A:53 , U A:100 , G A:101	BINDING SITE FOR RESIDUE IRI A 305
06	AC6	SOFTWARE	G A:65 , C A:67 , C A:68 , C A:69	BINDING SITE FOR RESIDUE IRI A 306
07	AC7	SOFTWARE	C A:72 , A A:73 , A A:150 , G A:151	BINDING SITE FOR RESIDUE IRI A 307
08	AC8	SOFTWARE	G A:103 , C A:104 , G A:122 , G A:123	BINDING SITE FOR RESIDUE IRI A 308
09	AC9	SOFTWARE	G A:41 , G A:42 , A A:157	BINDING SITE FOR RESIDUE IRI A 309
10	BC1	SOFTWARE	G A:97 , G A:98 , G A:130	BINDING SITE FOR RESIDUE MG A 310

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:DNA/RNA  Length:163
                                                                                                                                                                                                   
                 4gxy A   1 gGCGGCAGGUGCUCCCGACGUCGGGAGUUAAAAGGGAAGCCGGUGCAAGUCCGGCACGGUCCCGCCACUGUGACGGGGAGUCGCCCCUCGGGAUGUGCCACUGGCCCGGCCGGGAAGGCGGAGGGGCGGCGAGGAUCCGGAGUCAGGAAACCUGCCUGCCGUc 172
                            |       10        26        36        46        56        66        76        86        96       106      |119       129       139       149       159       169  |
                            |                19|                                                                                    113|                                                    172-CCC
                            1-GTP             26                                                                                     117

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Sites
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	Cis Peptide Bonds
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Still Images

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Description