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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACTERIOCIN LLPA FROM PSEUDOMONAS SP. IN COMPLEX WITH GLCNAC BETA(1-2)MAN ALPHA(1-3)[GLCNAC BETA(1-2)MAN ALPHA(1-6)]MAN
 
Authors :  A. Garcia-Pino, R. Loris
Date :  29 Jul 12  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Monocot-Lectin Fold, Bacteriocin, Mannose Based Carbohydrates, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Ghequire, A. Garcia-Pino, E. K. Lebbe, S. Spaepen, R. Loris, R. De Mot
Structural Determinants For Activity And Specificity Of The Bacterial Toxin Llpa.
Plos Pathog. V. 9 03199 2013
PubMed-ID: 23468636  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003199

(-) Compounds

Molecule 1 - PUTIDACIN L1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LLPA
    Organism Scientific: PSEUDOMONAS SP. BW11M1
    Organism Taxid: 216978
    Strain: PSEUDOMONAS PUTIDA BW11M1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1MAN3Ligand/IonALPHA-D-MANNOSE
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MAN-1Ligand/IonALPHA-D-MANNOSE
2NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1MAN3Ligand/IonALPHA-D-MANNOSE
2NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:159 , HOH A:355 , GLN B:171 , MAN B:301 , HOH B:502 , HOH B:509BINDING SITE FOR RESIDUE NAG B 300
2AC2SOFTWAREGLN B:171 , TYR B:179 , NAG B:300 , MAN B:302 , HOH B:509BINDING SITE FOR RESIDUE MAN B 301
3AC3SOFTWAREGLN B:171 , ASP B:173 , ASN B:175 , TYR B:179 , ASN B:188 , GLN B:192 , MAN B:301 , MAN B:303 , HOH B:501BINDING SITE FOR RESIDUE MAN B 302
4AC4SOFTWAREALA B:185 , THR B:186 , TRP B:187 , ASN B:188 , GLN B:266 , MAN B:302 , NAG B:304BINDING SITE FOR RESIDUE MAN B 303
5AC5SOFTWAREGLY A:193 , LYS A:194 , GLY A:195 , LYS B:267 , MAN B:303 , HOH B:501BINDING SITE FOR RESIDUE NAG B 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GC2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GC2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GC2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GC2)

(-) Exons   (0, 0)

(no "Exon" information available for 4GC2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.......ee...ee.....eee.....eeeee.....eeeee..eeeee.......eeeee........eeee...eeeeehhh.eeeee........hhhhheeeee.....eeeeeeeeeee..............eee...eee....eeee..eeeee.....eeee.....eeee.........eeee.....eeee.hhh.eeee.........eeee.....eeeeeeeeeee........eeeeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gc2 A   2 AGRTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKPVWARFGFQPTYRHIRKINPDQKPIDIWTWHF 276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271     


Chain B from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.......ee...ee.....eee.....eeeee.....eeeee..eeeee.......eeee......eeee...eeeee....eeeee........hhhhheeeee.....eeeeeeeeeee..............eee...ee......eee..eeeee.....eeee.....eeee.........eeee.....eeee.hhh.eeee.........eeee.....eeeeeeeeeee.........eeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gc2 B   4 RTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHSHTGGHASAVLRLQANGSIAILDEKPVWARFGFQPTYRHIRKINPDQKPIDIWTWH 275
                                    13        23        33        43        53        63     || 76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266         
                                                                                            69|                                                                                                                                                                                                          
                                                                                             73
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GC2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GC2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GC2)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4GC2)

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 Related Entries

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        Q8GEJ9_PSEPU | Q8GEJ9: 3m7h 3m7j 4gc1

(-) Related Entries Specified in the PDB File

3m7h FREE LLPA
3m7j
4gc1