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(-) Description

Title :  CRYSTAL STRUCTURE OF AMP COMPLEXES OF PORCINE LIVER FRUCTOSE-1,6-BISPHOSPHATASE MUTANT A54L WITH 1,2-ETHANEDIOL AS CRYO-PROTECTANT
 
Authors :  R. B. Honzatko, Y. Gao
Date :  28 Jul 12  (Deposition) - 21 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Allosteric Enzymes, Fbpase, Amp, 1, 2-Ethanediol, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. B. Honzatko, Y. Gao, N. D. Ginder
Water Structure Of The Central Hydrophobic Cavity Of Mammalian Fructose-1, 6-Bisphosphatase: A Potential Thermodynamic Determinant Of Allowed Quaternary States
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATASE 1
    Chains: A
    EC Number: 3.1.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B
    Expression System Strain: DF657
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FBP, FBP1
    Organism Common: PIGS,SWINE,WILD BOAR
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: FBPASE 1, D-FRUCTOSE-1,6-BISPHOSPHATE 1-PHOSPHOHYDROLASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2F6P1Ligand/IonFRUCTOSE-6-PHOSPHATE
3MN2Ligand/IonMANGANESE (II) ION
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2F6P4Ligand/IonFRUCTOSE-6-PHOSPHATE
3MN-1Ligand/IonMANGANESE (II) ION
4PO44Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:121 , ASN A:212 , TYR A:215 , ARG A:243 , TYR A:244 , GLY A:246 , MET A:248 , TYR A:264 , LYS A:274 , ARG A:276 , PO4 A:402 , HOH A:513 , HOH A:536 , HOH A:587BINDING SITE FOR RESIDUE F6P A 401
2AC2SOFTWAREASP A:68 , GLU A:97 , ASP A:118 , LEU A:120 , ASP A:121 , GLY A:122 , SER A:123 , ARG A:276 , GLU A:280 , F6P A:401 , MN A:403 , MN A:404 , HOH A:557 , HOH A:558BINDING SITE FOR RESIDUE PO4 A 402
3AC3SOFTWAREGLU A:97 , GLU A:98 , ASP A:118 , LEU A:120 , PO4 A:402BINDING SITE FOR RESIDUE MN A 403
4AC4SOFTWAREGLU A:97 , ASP A:118 , ASP A:121 , GLU A:280 , PO4 A:402BINDING SITE FOR RESIDUE MN A 404
5AC5SOFTWAREVAL A:17 , GLY A:21 , THR A:27 , GLY A:28 , GLU A:29 , MET A:30 , THR A:31 , LYS A:112 , TYR A:113 , ARG A:140 , HOH A:571BINDING SITE FOR RESIDUE AMP A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GBV)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4gbva_ A: Fructose-1,6-bisphosphatase                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeehhhhhhhhhhhhhhhhh..eeeeee......ee........eeeeeeeeehhhhh.....eeeeeeeee.......hhhhhh.hhh.eeeeeeeee...eeeeeee..eeeeeeee....eeeeeeeee.......eeee.hhhh...hhhhhhhhhhhhh........ee....hhhhhhhhhhhhh.eeee...............hhhhhhhhhhhh..eee...................eeeehhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gbv A  10 IVTLTRFVMEEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGILHLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRDVKIKKKGSIYSINEGYAKEFDPAITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYECNPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHA 335
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GBV)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (21, 21)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F16P1_PIG | P00636: 1cnq 1eyi 1eyj 1eyk 1fbc 1fbd 1fbe 1fbf 1fbg 1fbh 1fbp 1fj6 1fj9 1fpb 1fpd 1fpe 1fpf 1fpg 1fpi 1fpj 1fpk 1fpl 1frp 1fsa 1kz8 1lev 1nuw 1nux 1nuy 1nuz 1nv0 1nv1 1nv2 1nv3 1nv4 1nv5 1nv6 1nv7 1q9d 1rdx 1rdy 1rdz 1yxi 1yyz 1yz0 2f3b 2f3d 2fbp 2qvu 2qvv 3fbp 4fbp 4gbw 4gws 4gwu 4gww 4gwx 4gwy 4gwz 4gx3 4gx4 4gx6 4h45 4h46 4kxp 5fbp

(-) Related Entries Specified in the PDB File

1yxi 1yyz 1yz0 4gbw