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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF ACK1 WITH INHIBITOR
 
Authors :  J. Liu, N. Walker, Z. Wang
Date :  27 Apr 12  (Deposition) - 19 Sep 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A (1x),B (1x)
Keywords :  Drug Design, Enzyme Inhibitors, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Jiao, D. J. Kopecky, J. Liu, J. Liu, J. C. Jaen, M. G. Cardozo, R. Sharma, N. Walker, H. Wesche, S. Li, E. Farrelly, S. H. Xiao, Z. Wang, F. Kayser
Synthesis And Optimization Of Substituted Furo[2, 3-D]-Pyrimidin-4-Amines And 7H-Pyrrolo[2, 3-D]Pyrimidin-4-Amines As Ack1 Inhibitors.
Bioorg. Med. Chem. Lett. V. 22 6212 2012
PubMed-ID: 22929232  |  Reference-DOI: 10.1016/J.BMCL.2012.08.020

(-) Compounds

Molecule 1 - ACTIVATED CDC42 KINASE 1
    ChainsB, A
    EC Number2.7.10.2, 2.7.11.1
    EngineeredYES
    GeneTNK2, ACK1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymACK-1, TYROSINE KINASE NON-RECEPTOR PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
2T772Ligand/Ion6-{4-[2-(DIMETHYLAMINO)ETHOXY]PHENYL}-N-(1,3-DITHIOLAN-2-YLMETHYL)-5-PHENYL-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
2T771Ligand/Ion6-{4-[2-(DIMETHYLAMINO)ETHOXY]PHENYL}-N-(1,3-DITHIOLAN-2-YLMETHYL)-5-PHENYL-7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU B:132 , GLY B:133 , ASP B:134 , ALA B:156 , GLU B:206 , ALA B:208 , PRO B:209 , GLY B:211 , ARG B:256 , LEU B:259 , GLY B:269BINDING SITE FOR RESIDUE T77 B 401
2AC2SOFTWARELEU A:132 , GLY A:133 , ASP A:134 , ALA A:156 , GLU A:206 , ALA A:208 , PRO A:209 , LEU A:210 , GLY A:211 , LYS A:219 , ARG A:256 , LEU A:259 , GLY A:269 , ASP B:383BINDING SITE FOR RESIDUE T77 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EWH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro B:199 -Pro B:200
2Pro A:199 -Pro A:200

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EWH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EWH)

(-) Exons   (0, 0)

(no "Exon" information available for 4EWH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4ewha_ A: Activated CDC42 kinase 1, ACK1                                                                                                                                                                                                                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhh.eeeeeeeeee..eeeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewh A 117 LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHyVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 391
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386     
                                                                                                                                                                                                 284-PTR                                                                                                       

Chain B from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4ewhb_ B: Activated CDC42 kinase 1, ACK1                                                                                                                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhh.eeeeeeeeee..eeeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhh.........eeeee.....eeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee.......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ewh B 117 LTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHyVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 390
                                   126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386    
                                                                                                                                                                                                 284-PTR                                                                                                      

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EWH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EWH)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACK1_HUMAN | Q079121cf4 1u46 1u4d 1u54 3eqp 3eqr 4hzr 4hzs 4id7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4EWH)