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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LYSINE RIBOSWITCH BOUND TO A 6-AMINOCAPROIC ACID
 
Authors :  A. D. Garst, E. Porter, R. T. Batey
Date :  20 Apr 12  (Deposition) - 18 Jul 12  (Release) - 03 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Riboswitch Aptamer Domain, Regulatory Mrna, Translation, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. D. Garst, E. B. Porter, R. T. Batey
Insights Into The Regulatory Landscape Of The Lysine Riboswitch.
J. Mol. Biol. V. 423 17 2012
PubMed-ID: 22771573  |  Reference-DOI: 10.1016/J.JMB.2012.06.038

(-) Compounds

Molecule 1 - LYSINE RIBOSWITCH RNA
    ChainsA
    EngineeredYES
    FragmentLYSINE RIBOSWITCH APTAMER DOMAIN
    GeneASD
    Organism ScientificTHERMOTOGA MARITIMA
    Organism Taxid2336

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ACA1Ligand/Ion6-AMINOHEXANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:8 , G A:9 , C A:76 , G A:77 , G A:112 , HOH A:301 , HOH A:302BINDING SITE FOR RESIDUE ACA A 201

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:161
                                                                                                                                                                                                 
                 4erj A   1 GGACGGAGGCGCGCCCGAGAUGAGUAGGCUGUCCCAUCAGGGGAGGAAUCGGGGACGGCUGAAAGGCGAGGGCGCCGAAGCGAGCAGAGUUCCUCCCGCUCUGCUUGGCUGGGGGUGAGGGGAAUACCCUUACCACUGUCGCGAAAGCGGAGAGCCGUCCA 161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 

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 Classification and Annotation

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(-) Related Entries Specified in the PDB File

3d0u CRYSTAL STRUCTURE OF THE LYSINE RIBOSWITCH BOUND TO LYSINE
4erl