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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN FYN SH3 DOMAIN IN COMPLEX WITH THE SYNTHETIC PEPTIDE VSL12
 
Authors :  A. Camara-Artigas
Date :  05 Apr 12  (Deposition) - 10 Apr 13  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Beta Barrel, Proline Rich Motifs, Transferase-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Camara-Artigas, E. Ortiz-Salmeron, M. Andujar-Sanchez, J. Bacarizo, J. M. Martin-Garcia
The Role Of Water Molecules In The Binding Of Class I And I Peptides To The Sh3 Domain Of The Fyn Tyrosine Kinase
Acta Crystallogr. , Sect. F V. 72 713 2016
PubMed: search  |  Reference-DOI: 10.1107/S2053230X16012723

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE FYN
    ChainsA
    EC Number2.7.10.2
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3D
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentSH3 DOMAIN (UNP RESIDUES 81-143)
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPROTO-ONCOGENE SYN, PROTO-ONCOGENE C-FYN, SRC-LIKE KINASE, SLK, P59-FYN
 
Molecule 2 - VSL12 PEPTIDE
    ChainsB
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:135 , VAL A:138BINDING SITE FOR RESIDUE NA A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EIK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EIK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EIK)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4EIK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains d4eika_ A: automated matches                               SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..................eeeeee.....eeeeee.....eeeee...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4eik A  84 VTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 141
                                    93       103       113       123       133        

Chain B from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4eik B   2 SLARRPLPPLP  12
                                    11 

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EIK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EIK)

(-) Gene Ontology  (95, 95)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FYN_HUMAN | P062411a0n 1aot 1aou 1avz 1azg 1efn 1fyn 1g83 1m27 1nyf 1nyg 1shf 1zbj 2dq7 2mqi 2mrj 2mrk 3h0f 3h0h 3h0i 3ua6 3ua7 4d8d 4u17 4u1p 4znx

(-) Related Entries Specified in the PDB File

3ua6 FYN-SH3 DOMAIN NS5A PEPTIDE COMPLEX
3ua7 FYN-SH3 DOMAIN