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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GRASP55 GRASP DOMAIN WITH A PHOSPHOMIMETIC MUTATION (S189D)
 
Authors :  S. T. Truschel, M. Zhang, C. Bachert, M. R. Macbeth, A. D. Linstedt
Date :  27 Mar 12  (Deposition) - 09 May 12  (Release) - 27 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Pdz Domain, Golgi Tethering, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. T. Truschel, M. Zhang, C. Bachert, M. R. Macbeth, A. D. Linstedt
Allosteric Regulation Of Grasp Protein-Dependent Golgi Membrane Tethering By Mitotic Phosphorylation.
J. Biol. Chem. V. 287 19870 2012
PubMed-ID: 22523075  |  Reference-DOI: 10.1074/JBC.M111.326256

(-) Compounds

Molecule 1 - GOLGI REASSEMBLY-STACKING PROTEIN 2
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPRSETB
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentGRASP55 (UNP RESIDUES 1-208)
    GeneGORASP2, GOLPH6
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGRS2, GOLGI PHOSPHOPROTEIN 6, GOLPH6, GOLGI REASSEMBLY- STACKING PROTEIN OF 55 KDA, GRASP55, P59

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B
Biological Unit 3 (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1K1Ligand/IonPOTASSIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:182 , TRP A:184 , GLY A:185 , GLY A:186 , GLY A:188BINDING SITE FOR RESIDUE K A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EDJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly B:188 -Asp B:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EDJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EDJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4EDJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeee...hhhhhh......eeeeee..ee.....hhhhhhhhhh....eeeeeee.....eeeeee.............eeeeeee..hhhhh.eeeeee...hhhhhh......eeeeee.......hhhhhhhhhh....eeeeeee....eeeeeee.............eeee.hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4edj A   4 SQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGDLGCGIGYGYLHRIPTRPFE 208
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     

Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeee...hhhhhhh.....eeeeee..ee.....hhhhhhhhhh....eeeeeee.....eeeeee.............eeeeeee..hhhhh.eeeeee...hhhhhh......eeeeee......hhhhhhhhhhh....eeeeeee....eeeeeee.............eeee.hhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4edj B   6 SVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGDLGCGIGYGYLHRIPTRPFE 208
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205   

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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EDJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EDJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EDJ)

(-) Gene Ontology  (5, 5)

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UniProtKB/Swiss-Prot
        GORS2_HUMAN | Q9H8Y83rle

(-) Related Entries Specified in the PDB File

3rle WILD-TYPE GRASP55 GRASP DOMAIN