4DW5 - JenaLib

Asymmetric Unit (8, 36)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	BMA	8	Ligand/Ion	BETA-D-MANNOSE
3	CSQ	1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (R)-PHOSPHOROTHIOATE
4	CSV	1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (S)-PHOSPHOROTHIOATE
5	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	16	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	SO4	7	Ligand/Ion	SULFATE ION
8	U	1	Ligand/Ion	URIDINE-5'-MONOPHOSPHATE

Biological Unit 1 (6, 19)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	BMA	4	Ligand/Ion	BETA-D-MANNOSE
3	CSQ	1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (R)-PHOSPHOROTHIOATE
4	CSV	1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (S)-PHOSPHOROTHIOATE
5	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	SO4	3	Ligand/Ion	SULFATE ION
8	U	-1	Ligand/Ion	URIDINE-5'-MONOPHOSPHATE

Biological Unit 2 (4, 16)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	BMA	4	Ligand/Ion	BETA-D-MANNOSE
3	CSQ	-1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (R)-PHOSPHOROTHIOATE
4	CSV	-1	Ligand/Ion	O-[(2R,3S,4R,5R)-5-(4-AMINO-2-OXOPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL] O-{[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL}HYDROGEN (S)-PHOSPHOROTHIOATE
5	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
6	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	SO4	4	Ligand/Ion	SULFATE ION
8	U	-1	Ligand/Ion	URIDINE-5'-MONOPHOSPHATE

Sites (36, 36)

Asymmetric Unit (36, 36)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:4 , PRO A:36 , ASN A:85 , TRP A:86 , LEU A:95 , NAG A:1102 , HOH A:1228	BINDING SITE FOR RESIDUE NAG A 1101
02	AC2	SOFTWARE	ASN A:85 , TRP A:86 , TYR A:87 , PRO A:91 , NAG A:1101 , BMA A:1103 , HOH A:1228	BINDING SITE FOR RESIDUE NAG A 1102
03	AC3	SOFTWARE	TRP A:86 , ASN A:88 , NAG A:1102 , BMA A:1104 , BMA A:1105	BINDING SITE FOR RESIDUE BMA A 1103
04	AC4	SOFTWARE	TYR A:87 , BMA A:1103	BINDING SITE FOR RESIDUE BMA A 1104
05	AC5	SOFTWARE	GLU A:90 , PRO A:91 , BMA A:1103 , BMA A:1106	BINDING SITE FOR RESIDUE BMA A 1105
06	AC6	SOFTWARE	BMA A:1105 , HIS B:57	BINDING SITE FOR RESIDUE BMA A 1106
07	AC7	SOFTWARE	GLY A:26 , ASN A:28 , ALA A:149 , ILE A:151 , HOH A:1270 , HOH A:1282 , HOH A:1285	BINDING SITE FOR RESIDUE NAG A 1107
08	AC8	SOFTWARE	ARG A:25 , VAL A:43 , ASN A:67	BINDING SITE FOR RESIDUE NAG A 1108
09	AC9	SOFTWARE	LEU A:94 , ASN A:97 , NAG A:1110 , HOH A:1230 , HOH A:1265 , HOH A:1276 , GLU B:90 , LEU B:94	BINDING SITE FOR RESIDUE NAG A 1109
10	BC1	SOFTWARE	NAG A:1109 , HOH A:1294	BINDING SITE FOR RESIDUE NAG A 1110
11	BC2	SOFTWARE	LYS A:98 , THR A:99 , ASN A:102 , NAG A:1112	BINDING SITE FOR RESIDUE NAG A 1111
12	BC3	SOFTWARE	NAG A:1111	BINDING SITE FOR RESIDUE NAG A 1112
13	BC4	SOFTWARE	ASN A:13 , ARG A:20 , HOH A:1280	BINDING SITE FOR RESIDUE NAG A 1113
14	BC5	SOFTWARE	LYS A:65 , ARG A:72 , HIS A:76 , ASN A:79 , CSQ A:1117 , CSV A:1118 , HOH A:1227 , HOH A:1251	BINDING SITE FOR RESIDUE SO4 A 1114
15	BC6	SOFTWARE	ARG A:72 , ARG A:75 , HOH A:1218 , HOH A:1246	BINDING SITE FOR RESIDUE SO4 A 1115
16	BC7	SOFTWARE	HIS A:32 , TRP A:35 , HIS A:76 , GLU A:77 , LYS A:80 , HIS A:81 , HOH A:1268	BINDING SITE FOR RESIDUE SO4 A 1116
17	BC8	SOFTWARE	ASN A:9 , GLN A:19 , HIS A:32 , ALA A:62 , SER A:63 , ARG A:72 , LEU A:73 , GLN A:129 , SO4 A:1114 , HOH A:1217 , HOH A:1260	BINDING SITE FOR RESIDUE CSQ A 1117
18	BC9	SOFTWARE	ASN A:9 , GLN A:19 , HIS A:32 , ALA A:62 , ARG A:72 , LEU A:73 , GLN A:129 , SO4 A:1114 , HOH A:1217 , HOH A:1248 , HOH A:1260	BINDING SITE FOR RESIDUE CSV A 1118
19	CC1	SOFTWARE	HIS A:46 , THR A:49 , THR A:51 , GLU A:52 , HOH A:1262 , THR B:49 , THR B:51 , GLU B:52 , SO4 B:1115 , HOH B:1218	BINDING SITE FOR RESIDUE 1PE A 1119
20	CC2	SOFTWARE	ASN B:4 , PRO B:36 , ASN B:85 , TRP B:86 , LEU B:95 , NAG B:1102 , HOH B:1205 , HOH B:1224	BINDING SITE FOR RESIDUE NAG B 1101
21	CC3	SOFTWARE	ASN B:85 , TRP B:86 , TYR B:87 , PRO B:91 , NAG B:1101 , BMA B:1103 , BMA B:1106 , HOH B:1205	BINDING SITE FOR RESIDUE NAG B 1102
22	CC4	SOFTWARE	TRP B:86 , ASN B:88 , NAG B:1102 , MAN B:1104 , BMA B:1105	BINDING SITE FOR RESIDUE BMA B 1103
23	CC5	SOFTWARE	TYR B:87 , BMA B:1103 , BMA B:1106	BINDING SITE FOR RESIDUE MAN B 1104
24	CC6	SOFTWARE	GLU B:90 , PRO B:91 , BMA B:1103 , BMA B:1107 , HOH B:1259	BINDING SITE FOR RESIDUE BMA B 1105
25	CC7	SOFTWARE	NAG B:1102 , MAN B:1104	BINDING SITE FOR RESIDUE BMA B 1106
26	CC8	SOFTWARE	HIS A:57 , BMA B:1105 , HOH B:1271	BINDING SITE FOR RESIDUE BMA B 1107
27	CC9	SOFTWARE	GLU A:90 , LEU A:94 , ALA B:55 , HIS B:57 , ASN B:97 , NAG B:1109 , HOH B:1208	BINDING SITE FOR RESIDUE NAG B 1108
28	DC1	SOFTWARE	NAG B:1108	BINDING SITE FOR RESIDUE NAG B 1109
29	DC2	SOFTWARE	GLY B:26 , ASN B:28 , ALA B:149 , ILE B:151 , HOH B:1250 , HOH B:1252	BINDING SITE FOR RESIDUE NAG B 1110
30	DC3	SOFTWARE	ASN B:13 , ARG B:20 , HOH B:1258	BINDING SITE FOR RESIDUE NAG B 1111
31	DC4	SOFTWARE	LYS B:98 , THR B:99 , ASN B:102 , GLN B:154	BINDING SITE FOR RESIDUE NAG B 1112
32	DC5	SOFTWARE	HIS B:32 , TRP B:35 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81 , HOH B:1228 , HOH B:1238 , HOH B:1239	BINDING SITE FOR RESIDUE SO4 B 1113
33	DC6	SOFTWARE	HIS B:76 , ASN B:79 , HOH B:1269 , HOH B:1279	BINDING SITE FOR RESIDUE SO4 B 1114
34	DC7	SOFTWARE	1PE A:1119 , THR B:49 , ASP B:50 , THR B:51 , HOH B:1234	BINDING SITE FOR RESIDUE SO4 B 1115
35	DC8	SOFTWARE	ASN B:9 , GLN B:19 , HIS B:32 , ALA B:62 , GLN B:129	BINDING SITE FOR RESIDUE U B 1116
36	DC9	SOFTWARE	ARG A:120 , LYS A:141 , THR B:138 , GLY B:139	BINDING SITE FOR RESIDUE SO4 B 1117

SS Bonds (8, 8)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with POLG_BVDVC | Q96662 from UniProtKB/Swiss-Prot  Length:3907

    Alignment length:159
                                   280       290       300       310       320       330       340       350       360       370       380       390       400       410       420         
           POLG_BVDVC   271 ENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEI 429
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhh..eeeeeee.............hhhhhh........hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-...eeeeeeeee....eeeeeeee.............eeee..eee...ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------RNASE_T2_2  ----------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dw5 A   3 ENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILLMNKTQANLTEG-PLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEI 161
                                    12        22        32        42        52        62        72        82        92       102   | | 112       122       132       142       152         
                                                                                                                                 106 |                                                     
                                                                                                                                   108

Chain B from PDB  Type:PROTEIN  Length:160
 aligned with POLG_BVDVC | Q96662 from UniProtKB/Swiss-Prot  Length:3907

    Alignment length:160
                                   279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429
           POLG_BVDVC   270 GENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEI 429
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......hhhhhhhhhh..eeeeeee.............hhhhhhh.......hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee....eeeeeeee.............eeee..eee...ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------RNASE_T2_2  ----------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dw5 B   2 SENITQWNLQDNGTEGIQRAMFQRGVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEKTNYTCCRLQRHEWNKHGWCNWYNIEPWILLMNKTQANLTEGQPLRECAVTCRYDRDSDLNVVTQARDSPTPLTGCKKGKNFSFAGILVQGPCNFEI 161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (50, 50)

Asymmetric Unit(hide GO term definitions)

Chain A,B (POLG_BVDVC | Q96662)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0008026	ATP-dependent helicase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
	GO:0004197	cysteine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0008234	cysteine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0004386	helicase activity	Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016817	hydrolase activity, acting on acid anhydrides	Catalysis of the hydrolysis of any acid anhydride.
	GO:0005216	ion channel activity	Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
	GO:0017111	nucleoside-triphosphatase activity	Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0033897	ribonuclease T2 activity	Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0070008	serine-type exopeptidase activity	Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0030683	evasion or tolerance by virus of host immune response	Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0039520	induction by virus of host autophagy	Any process in which a virus activates or increases the frequency, rate or extent of autophagy in the host.
	GO:0034220	ion transmembrane transport	A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0039707	pore formation by virus in membrane of host cell	The aggregation, arrangement and bonding together of a set of components by a virus to form a pore complex in a membrane of a host organism.
	GO:0051259	protein oligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0039548	suppression by virus of host IRF3 activity	Any process in which a virus stops, prevents, or reduces the activity of host IRF3 (interferon regulatory factor-3), a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF3, which allows IRF3 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes.
	GO:0039503	suppression by virus of host innate immune response	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
	GO:0001172	transcription, RNA-templated	The cellular synthesis of RNA on a template of RNA.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0039694	viral RNA genome replication	The replication of a viral RNA genome.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0019079	viral genome replication	Any process involved directly in viral genome replication, including viral nucleotide metabolism.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019082	viral protein processing	Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0044228	host cell surface	The external part of the host cell wall and/or host plasma membrane.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0044385	integral to membrane of host cell	Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane. Occurring in a host cell.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

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		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]
		DC1	[ RasMol ]	+environment [ RasMol ]
		DC2	[ RasMol ]	+environment [ RasMol ]
		DC3	[ RasMol ]	+environment [ RasMol ]
		DC4	[ RasMol ]	+environment [ RasMol ]
		DC5	[ RasMol ]	+environment [ RasMol ]
		DC6	[ RasMol ]	+environment [ RasMol ]
		DC7	[ RasMol ]	+environment [ RasMol ]
		DC8	[ RasMol ]	+environment [ RasMol ]
		DC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Cys A:70 - Cys A:71	[ RasMol ]
		Cys B:70 - Cys B:71	[ RasMol ]
		Pro A:108 - Leu A:109	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 36)

Sites (36, 36)

SS Bonds (8, 8)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (50, 50)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File