| molecular function |
|---|
| | GO:1990269 | | RNA polymerase II C-terminal domain phosphoserine binding | | Interacting selectively and non-covalently with phosphorylated serine residues in the C-terminal domain of RNA polymerase II. |
| | GO:0000993 | | RNA polymerase II core binding | | Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits. |
| | GO:0003682 | | chromatin binding | | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
| | GO:0005515 | | protein binding | | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
| | GO:0001076 | | transcription factor activity, RNA polymerase II transcription factor binding | | Interacting selectively and non-covalently with an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well. |
| | GO:0001089 | | transcription factor activity, TFIIF-class transcription factor binding | | Interacting selectively and non-covalently with a basal RNA polymerase II transcription factor of the TFIIF class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well. |
| biological process |
|---|
| | GO:0016570 | | histone modification | | The covalent alteration of one or more amino acid residues within a histone protein. |
| | GO:0031124 | | mRNA 3'-end processing | | Any process involved in forming the mature 3' end of an mRNA molecule. |
| | GO:0045910 | | negative regulation of DNA recombination | | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. |
| | GO:2001255 | | positive regulation of histone H3-K36 trimethylation | | Any process that activates or increases the frequency, rate or extent of histone H3-K36 trimethylation. |
| | GO:2001165 | | positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues | | Any process that activates or increases the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues. |
| | GO:2001209 | | positive regulation of transcription elongation from RNA polymerase I promoter | | Any process that activates or increases the frequency, rate or extent of transcription elongation from RNA polymerase I promoter. |
| | GO:0032968 | | positive regulation of transcription elongation from RNA polymerase II promoter | | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
| | GO:0034402 | | recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | | The process in which proteins required for 3'-end transcript processing become associated with the RNA polymerase II holoenzyme complex and the 3' end of a transcript. |
| | GO:2001173 | | regulation of histone H2B conserved C-terminal lysine ubiquitination | | Any process that modulates the frequency, rate or extent of histone H2B conserved C-terminal lysine ubiquitination. |
| | GO:0006355 | | regulation of transcription, DNA-templated | | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
| | GO:0090262 | | regulation of transcription-coupled nucleotide-excision repair | | Any process that modulates the frequency, rate, or extent of the nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway. |
| | GO:0006362 | | transcription elongation from RNA polymerase I promoter | | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase I specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase I. |
| | GO:0006368 | | transcription elongation from RNA polymerase II promoter | | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. |
| | GO:0006351 | | transcription, DNA-templated | | The cellular synthesis of RNA on a template of DNA. |
| cellular component |
|---|
| | GO:0016593 | | Cdc73/Paf1 complex | | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
| | GO:0005654 | | nucleoplasm | | That part of the nuclear content other than the chromosomes or the nucleolus. |
| | GO:0005634 | | nucleus | | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| | GO:0035327 | | transcriptionally active chromatin | | The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed. |
Description
