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(-) Description

Title :  STRUCTURE OF RAB14 IN COMPLEX WITH RAB-COUPLING PROTEIN (RCP)
 
Authors :  P. Lall, A. R. Khan
Date :  25 Apr 14  (Deposition) - 20 May 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Hydrolase, Rab14 Gtpase, Endosomal Trafficking, Rab- Binding Domain (Rbd), Effector Recruitment (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Lall, A. J. Lindsay, S. Hanscom, T. Kecman, E. S. Taglauer, U. M. Mcveigh, E. Franklin, M. W. Mccaffrey, A. R. Khan
Structure-Function Analyses Of The Interactions Between Rab11 And Rab14 Small Gtpases With Their Shared Effector Rab Coupling Protein (Rcp).
J. Biol. Chem. V. 290 18817 2015
PubMed-ID: 26032412  |  Reference-DOI: 10.1074/JBC.M114.612366

(-) Compounds

Molecule 1 - RAS-RELATED PROTEIN RAB-14
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 8-180
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - RAB11 FAMILY-INTERACTING PROTEIN 1
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC28-BSA4
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 582-649
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRAB11-FIP1, RAB-COUPLING PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GTP1Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:19 , MET A:20 , GLY A:21 , VAL A:22 , GLY A:23 , LYS A:24 , SER A:25 , CYS A:26 , PHE A:36 , ALA A:38 , ASP A:39 , CYS A:40 , HIS A:42 , THR A:43 , GLY A:69 , ASN A:124 , LYS A:125 , ASP A:127 , LEU A:128 , SER A:154 , ALA A:155 , LYS A:156 , MG A:1175 , HOH A:2005 , HOH A:2006BINDING SITE FOR RESIDUE GTP A 900
2AC2SOFTWARESER A:25 , THR A:43 , GTP A:900 , HOH A:2005 , HOH A:2006BINDING SITE FOR RESIDUE MG A1175

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:26 -A:40

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ile C:638 -Pro C:639

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D0G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D0G)

(-) Exons   (0, 0)

(no "Exon" information available for 4D0G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee........hhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d0g A   8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGLERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 174
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       

Chain C from PDB  Type:PROTEIN  Length:46
                                                                              
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 4d0g C 595 ELIQLVLKQKETISKKEFQVRELEDYIDNLLVRVMEETPNILRIPT 640
                                   604       614       624       634      

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D0G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D0G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D0G)

(-) Gene Ontology  (54, 61)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ile C:638 - Pro C:639   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAB14_HUMAN | P611061z0f 4drz

(-) Related Entries Specified in the PDB File

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