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(-) Description

Title :  STRUCTURAL BASIS FOR GL479 A DUAL PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA AGONIST
 
Authors :  J. C. Santos, A. Bernardes, I. Polikarpov
Date :  05 Dec 13  (Deposition) - 24 Dec 14  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Dual Agonist, Ppar, Nuclear Receptor, Gl479 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. C. Dos Santos, A. Bernardes, L. Giampietro, A. Ammazzalorso, B. De Filippis, R. Amoroso, I. Polikarpov
Different Binding And Recognition Modes Of Gl479, A Dual Agonist Of Peroxisome Proliferator-Activated Receptor Alpha/Gamma.
J. Struct. Biol. V. 191 332 2015
PubMed-ID: 26185032  |  Reference-DOI: 10.1016/J.JSB.2015.07.006

(-) Compounds

Molecule 1 - PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA
    ChainsA
    EC Number2.3.1.48
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentLIGAND BINDING DOMAIN, RESDIUES 195-468
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPPAR-ALPHA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1Y1N1Ligand/Ion2-METHYL-2-[4-[2-[4-[(E)-PHENYLDIAZENYL]PHENOXY]ETHYL]PHENOXY]PROPANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:273 , CYS A:276 , GLN A:277 , THR A:279 , SER A:280 , TYR A:314 , PHE A:318 , LEU A:321 , VAL A:332 , MET A:355 , HIS A:440 , VAL A:444 , LEU A:460 , TYR A:464BINDING SITE FOR RESIDUE Y1N A1468

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CI4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:349 -Pro A:350

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CI4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CI4)

(-) Exons   (0, 0)

(no "Exon" information available for 4CI4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhh...eee.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..eeeehhh.eeeehhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ci4 A 204 KSLAKRIYEAYLKNFNMNKVKARVILSPPFVIHDMETLCMAEKTLVKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYRDM 467
                                   213       223      |239       249     ||269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459        
                                                    230|               255|                                                                                                                                                                                                         
                                                     237                266                                                                                                                                                                                                         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CI4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CI4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CI4)

(-) Gene Ontology  (70, 70)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPARA_HUMAN | Q078691i7g 1k7l 1kkq 2npa 2p54 2rew 2znn 3et1 3fei 3g8i 3kdt 3kdu 3sp6 3vi8 4bcr 5azt 5hyk

(-) Related Entries Specified in the PDB File

4ci5 STRUCTURAL BASIS FOR GL479 A DUAL PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA AGONIST