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(-) Description

Title :  PESTIVIRUS NS3 HELICASE
 
Authors :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
Date :  14 Oct 13  (Deposition) - 21 Jan 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Sf2 Helicases, Pestivirus, Flaviviridae Ns3, Saxs (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
X-Ray Structure Of The Pestivirus Ns3 Helicase And Its Conformation In Solution.
J. Virol. V. 89 4356 2015
PubMed-ID: 25653438  |  Reference-DOI: 10.1128/JVI.03165-14

(-) Compounds

Molecule 1 - SERINE PROTEASE NS3
    Chains: A, B, C, D
    EC Number: 3.4.21.113, 3.6.1.15, 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: HELICASE DOMAIN, 1792-2280
    Mutation: YES
    Organism Scientific: CLASSICAL SWINE FEVER VIRUS
    Organism Taxid: 11096
    Strain: ALFORT
    Synonym: NON-STRUCTURAL PROTEIN 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CBL)

(-) Sites  (0, 0)

(no "Site" information available for 4CBL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CBL)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ser A:444 -Pro A:445
2Met A:483 -Pro A:484
3Ser B:444 -Pro B:445
4Met B:483 -Pro B:484
5Ser C:444 -Pro C:445
6Met C:483 -Pro C:484
7Thr D:352 -Pro D:353
8Ser D:444 -Pro D:445
9Met D:483 -Pro D:484

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CBL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CBL)

(-) Exons   (0, 0)

(no "Exon" information available for 4CBL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:482
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...eeeeee.hhhhh..hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee..............eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee.hhhhhhhhh....eeee.hhhh.........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbl A 203 ATDLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPAGVTTTGQKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKYIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENA 689
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  ||   363       373       383       393       403       413       423     ||437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687  
                                                                                                                                                                                  355|                                                                     429|                                                                                                                                                                                                                                                               
                                                                                                                                                                                   357                                                                      434                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...eeeeee.hhhhh..hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee........eeeee...........eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee...hhhhhhhhhhh...eeee.hhhh.........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbl B 202 SATDLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATTGQKHPIEEFIAPEVGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKYIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENAL 690
                                   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351|      368     ||380       390       400       410       420       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681         
                                                                                                                                                                               351|            374|                                                428|                                                                                                                                                                                                                                                                    
                                                                                                                                                                                359             377                                                 430                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:468
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh....eeeeee......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee......eeeee.........hhh.eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeee.hhhh.........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cbl C 205 DLTEMVKKITTMNRGEFRQITLAAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKYIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGL 683
                                   214       224  ||   236       246       256       266       276       286       296       306       316       326       336       346      |365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675        
                                                227|                                                                                                                        353|                                                                                                                                                                                                                                                                                                                                
                                                 230                                                                                                                         363                                                                                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:462
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh....eeeee......hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhhhhh.eeeee......eeeee.......hhh.eeee..eeee.hhh..eeee..hhhhhhhhhhhhhhh...eeee....hhhhhhhhh...eeee.hhhh.........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cbl D 205 DLTEMVKKITTMNRGEFRQITLATGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPKHPIEEFIAPEVGEDLGSEYLDIAGLKIPVEEMNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKYIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVG 682
                                   214       224   ||  236       246       256       266       276       286       296       306       316       326       336       346      |365       377       387       397|      408       418       428       438  ||   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680  
                                                 228|                                                                                                                       353|        374|                 397|                                       441|                                                                                                                                                                                                                                              
                                                  231                                                                                                                        363         377                  399                                        444
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CBL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CBL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CBL)

(-) Gene Ontology  (52, 52)

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  Cis Peptide Bonds
    Met A:483 - Pro A:484   [ RasMol ]  
    Met B:483 - Pro B:484   [ RasMol ]  
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        POLG_CSFVA | P19712: 4cbg 4cbh 4cbi 4cbm 5mz4

(-) Related Entries Specified in the PDB File

4cbg PESTIVIRUS NS3 HELICASE
4cbh PESTIVIRUS NS3 HELICASE
4cbi PESTIVIRUS NS3 HELICASE
4cbm PESTIVIRUS NS3 HELICASE