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(-) Description

Title :  PESTIVIRUS NS3 HELICASE
 
Authors :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
Date :  14 Oct 13  (Deposition) - 21 Jan 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, Flaviviridae Ns3, Saxs (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Tortorici, S. Duquerroy, J. Kwok, C. Vonrhein, J. Perez, B. Lamp, G. Bricogne, T. Rumenapf, P. Vachette, F. A. Rey
X-Ray Structure Of The Pestivirus Ns3 Helicase And Its Conformation In Solution.
J. Virol. V. 89 4356 2015
PubMed-ID: 25653438  |  Reference-DOI: 10.1128/JVI.03165-14

(-) Compounds

Molecule 1 - SERINE PROTEASE NS3
    Chains: A, B, C, D
    EC Number: 3.4.21.113, 3.6.1.15, 3.6.4.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: HELICASE DOMAIN, 1782-2280
    Organism Scientific: CLASSICAL SWINE FEVER VIRUS
    Organism Taxid: 11096
    Other Details: VIRUS HOST, SUS SCROFA (PIG)
    Strain: ALFORT
    Synonym: NON-STRUCTURAL PROTEIN 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 78)

Asymmetric Unit (2, 78)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE76Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 19)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 19)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 20)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE19Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 20)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE19Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS C:324 , CYS C:325 , THR C:496 , GLY C:498 , GLU C:499 , LYS C:526BINDING SITE FOR RESIDUE ACT C1685
2AC2SOFTWAREHIS D:324 , CYS D:325 , THR D:496 , GLN D:502 , LYS D:526BINDING SITE FOR RESIDUE ACT D1684

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CBG)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:444 -Pro A:445
2Ser B:444 -Pro B:445
3Ser C:444 -Pro C:445
4Ser D:444 -Pro D:445
5Ser A:684 -Thr A:685
6Ile D:454 -Glu D:455
7Gly D:457 -Val D:458
8Thr D:459 -Leu D:460

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CBG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CBG)

(-) Exons   (0, 0)

(no "Exon" information available for 4CBG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.....eeee...hhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhhh.hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeee........eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeeehhhhhhhhh....eeee..........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.eeee..eeeeee........ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbg A 206 LTEmVKKITTmNRGEFRQITLAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYmRQKHPSIAFNLRIGEmKEGDmATGITYASYGYFCQmSQPKLRAAmVEYSFIFLDEYHCATPEQLAImGKIHRFSENLRVVAmTATGQKHPIEEFIAPEVmKGEDLGSEYLDIAGLKIPVEEmKNNmLVFVPTRNmAVEAAKKLKAKGYNSGYYPSNLRVVTSQSPYVVVATNAITLPDLDVVVDTGLKCEKRIRLSPKmPFIVTGLKRmAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREmNYDWSLYEEDSLmITQLEILNNLLISEELPmAVKNImARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLST 685
                               |   215|      225 ||    238       248       258       268       278    |  288       298    |  308   |   318       328     | 338       348|  ||  366       376       386       396|   |  406   |   416       426 ||    441       451  ||   465       475       485       495       505       515       525       535       545       555       565|      575       585    |  595       605       615       625       635       645       655       665       675       685
                               |      |        227|                                 267-MSE         283-MSE|            303-MSE  312-MSE               334-MSE        349-MSE           375-MSE               397-MSE      410-MSE           428|                 454|                     483-MSE   493-MSE                                                     553-MSE      566-MSE           584-MSE |                                                                                               
                             209-MSE  |         231                                                      288-MSE                                                         352|                                     401-MSE                     434                  459                                                                                                                                590-MSE                                                                                           
                                    216-MSE                                                                                                                               361                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.....eeeee.....hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhh..hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee.......eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeeehhhhhhhhh....eeee...........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee...ee..ee............ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbg B 206 LTEmVKKITTmNRGEFRQITLAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYmRQKHPSIAFNLRIGEmKEGDmATGITYASYGYFCQmSQPKLRAAmVEYSFIFLDEYHCATPEQLAImGKIHRFSENLRVVAmTATGQKHPIEEFIAPEVmKGEDLGSEYLDIAGLKIPVEEmKNNmLVFVPTRNmAVEAAKKLKAKGYNSGYYPSNLRVVTSQSPYVVVATNAIVTLPDLDVVVDTGLKCEKRIRLSPKmPFIVTGLKRmAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREmNYDWSLYEEDSLmITQLEILNNLLISEELPmAVKNImARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLST 685
                               |   215|      225 ||    238       248       258       268       278    |  288       298    |  308   |   318       328     | 338       348| ||   366       376       386       396|   |  406   |   416       426 ||    441       451  ||   464       474       484       494       504       514       524       534       544       554       564 |     574       584     | 594       604       614       624       634       644       654       664       674       684 
                             209-MSE  |        227|                                 267-MSE         283-MSE|            303-MSE  312-MSE               334-MSE        349-MSE           375-MSE               397-MSE      410-MSE           428|                 454|                      483-MSE   493-MSE                                                     553-MSE      566-MSE           584-MSE |                                                                                               
                                    216-MSE     231                                                      288-MSE                                                        351|                                      401-MSE                     434                  458                                                                                                                                 590-MSE                                                                                           
                                                                                                                                                                         360                                                                                                                                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhhh.hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee........eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee.....hhhhhhhhh....eeee...........eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.....................ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbg C 205 DLTEmVKKITTmNRGEFRQITLKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYmRQKHPSIAFNLRIGEmKEGDmATGITYASYGYFCQmSQPKLRAAmVEYSFIFLDEYHCATPEQLAImGKIHRFSENLRVVAmTATPGQKHPIEEFIAPEVmKGEDLGSEYLDIAGLKIPVEEmKNNmLVFVPTRNmAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIVTLPDLDVVVDTGLKCEKRIRLSPKmPFIVTGLKRmAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREmNYDWSLYEEDSLmITQLEILNNLLISEELPmAVKNImARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLST 685
                                |  214 |     224 ||    239       249       259       269       279   |   289       299   |   309  |    319       329    |  339       349   ||  366       376       386       396|   |  406   |   416       426       436       446       459       469       479   |   489   |   499       509       519       529       539       549   |   559      |569       579    |  589|      599       609       619       629       639       649       659       669       679      
                              209-MSE  |       226|                                267-MSE         283-MSE|            303-MSE  312-MSE               334-MSE        349-MSE|           375-MSE               397-MSE      410-MSE                                     454|                      483-MSE   493-MSE                                                     553-MSE      566-MSE           584-MSE |                                                                                               
                                     216-MSE    232                                                     288-MSE                                                           361                                     401-MSE                                               458                                                                                                                                 590-MSE                                                                                           


Chain D from PDB  Type:PROTEIN  Length:470
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.....eeeee.....hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhhhh....eeee............eeeeehhhhhh.hhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee.........eeeee.............eeee..eeee.hhhhh.eeee..hhhhhhhhhhhhhhh...eeee........hhhhhh....eeee..............eeee..eeeeeeeee......eeeeeeeee.hhhhhhhhhh.......eeeee..........hhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhh....hhhhhhhh......ee.....................ee.........eeehhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cbg D 205 DLTEmVKKITTmNRGEFRQITLAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYmRQKHPSIAFNLRIGEmKEGDmATGITYASYGYFCQmSQPKLRAAmVEYSFIFLDEYHCATPEQLAImGKIHRFSENLRVVAmTATPTGQKHPIEEFIAPEVmKGEDLGSEYLDIAGLKIPVEEmKNNmLVFVPTRNmAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKmPFIVTGLKRmAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREmNYDWSLYEEDSLmITQLEILNNLLISEELPmAVKNImARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGL 683
                                |  214 |     224  ||   237       247       257       267       277     | 287|      297     | 307    |  317       327      |337       347 |   ||363       373 |     383       393   |   403      |413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563  |    573       583|     |593       603       613       623       633       643       653       663       673       683
                              209-MSE  |        227|                                 267-MSE         283-MSE|            303-MSE  312-MSE               334-MSE        349-MSE|            375-MSE               397-MSE      410-MSE                                                                  483-MSE   493-MSE                                                     553-MSE      566-MSE           584-MSE |                                                                                             
                                     216-MSE     231                                                      288-MSE                                                           360                                      401-MSE                                                                                                                                                                                      590-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CBG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CBG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CBG)

(-) Gene Ontology  (52, 52)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        POLG_CSFVA | P19712: 4cbh 4cbi 4cbl 4cbm 5mz4

(-) Related Entries Specified in the PDB File

4cbh PESTIVIRUS NS3 HELICASE
4cbi PESTIVIRUS NS3 HELICASE
4cbl PESTIVIRUS NS3 HELICASE
4cbm PESTIVIRUS NS3 HELICASE